Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H7680_RS06865 Genome accession   NZ_AP023394
Coordinates   1385236..1385898 (-) Length   220 a.a.
NCBI ID   WP_003057999.1    Uniprot ID   A0ABU0A4Z4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 159     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380236..1390898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7680_RS06850 (SDSE159_13410) sodA 1381190..1381795 (-) 606 WP_014612432.1 superoxide dismutase SodA -
  H7680_RS06855 (SDSE159_13420) holA 1381885..1382931 (-) 1047 WP_014612433.1 DNA polymerase III subunit delta -
  H7680_RS06860 (SDSE159_13430) comEC/celB 1383012..1385255 (-) 2244 WP_014612434.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H7680_RS06865 (SDSE159_13440) comEA 1385236..1385898 (-) 663 WP_003057999.1 helix-hairpin-helix domain-containing protein Machinery gene
  H7680_RS06870 (SDSE159_13450) - 1386295..1387035 (-) 741 WP_003062277.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  H7680_RS06875 (SDSE159_13460) - 1387153..1387929 (+) 777 WP_138128125.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H7680_RS06880 (SDSE159_13470) - 1387919..1388197 (+) 279 WP_003061674.1 GIY-YIG nuclease family protein -
  H7680_RS06885 (SDSE159_13480) - 1388221..1390221 (-) 2001 WP_014612436.1 potassium transporter Kup -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24080.46 Da        Isoelectric Point: 5.8872

>NTDB_id=70957 H7680_RS06865 WP_003057999.1 1385236..1385898(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MIDDLLTKGTNSLKKVYSLPRLIGVVLAIFLILTLSFVIWGKEQSQTKLPIVSTSSSIQQPASEEKKYSSEESNILVDLK
GAVQQEGVYKLRANSRVRDVIELAGGLTQEADRHAVNFAEKLVDEQVVYVAKQGEDISVLPNASSAGKANAEMSNSTKVN
INKANLEELQRISGIGVKRAQDILETRDSLGGFKTLDDLRQVSGIGEKTLEKLKHELSLD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=70957 H7680_RS06865 WP_003057999.1 1385236..1385898(-) (comEA) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGATAGATGACTTGTTAACTAAAGGAACAAATAGCTTGAAAAAGGTTTATTCTCTGCCACGCTTGATTGGTGTTGTGTT
AGCCATTTTTCTGATACTAACCCTAAGTTTTGTTATCTGGGGCAAAGAGCAGAGTCAAACAAAACTTCCTATTGTATCAA
CTTCTTCTTCCATACAACAGCCAGCTAGTGAGGAAAAAAAGTATTCTTCAGAAGAGAGTAATATTTTAGTGGATTTAAAA
GGAGCCGTACAACAGGAGGGAGTTTATAAGCTCAGGGCTAATAGCCGTGTGCGCGATGTCATTGAATTAGCTGGGGGACT
TACTCAGGAAGCTGATAGACATGCTGTTAATTTTGCAGAAAAACTGGTGGATGAGCAGGTTGTGTATGTGGCTAAGCAGG
GTGAAGACATTTCTGTCTTGCCAAATGCCTCCTCAGCAGGTAAAGCTAACGCAGAAATGTCTAACTCAACAAAGGTGAAT
ATCAATAAGGCAAATTTAGAGGAGTTACAACGTATTTCGGGCATTGGTGTAAAAAGGGCTCAGGATATTCTTGAGACGAG
AGACAGTCTAGGTGGCTTTAAAACGTTAGATGATCTTAGACAGGTATCTGGAATTGGTGAAAAAACACTTGAGAAATTGA
AACATGAACTATCGTTGGACTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-129)

Helix-hairpin-helix motif (HHH_3)

(155-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

38.389

95.909

0.368

Multiple sequence alignment