Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMK59_RS09260 Genome accession   NZ_CP101302
Coordinates   1958140..1958769 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2000-3039     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1953140..1963769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK59_RS09240 (NMK59_09240) ycbZ 1953541..1955301 (-) 1761 WP_000156526.1 Lon protease family protein -
  NMK59_RS09245 (NMK59_09245) matP 1955487..1955939 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NMK59_RS09250 (NMK59_09250) ompA 1956015..1957055 (-) 1041 WP_000750416.1 porin OmpA -
  NMK59_RS09255 (NMK59_09255) sulA 1957412..1957921 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NMK59_RS09260 (NMK59_09260) sxy/tfoX 1958140..1958769 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NMK59_RS09265 (NMK59_09265) yccS 1958732..1960894 (-) 2163 WP_000875044.1 YccS family putative transporter -
  NMK59_RS09270 (NMK59_09270) yccF 1960904..1961350 (-) 447 WP_001261231.1 YccF domain-containing protein -
  NMK59_RS09275 (NMK59_09275) helD 1961473..1963527 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=709557 NMK59_RS09260 WP_000839153.1 1958140..1958769(+) (sxy/tfoX) [Escherichia coli strain 2000-3039]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=709557 NMK59_RS09260 WP_000839153.1 1958140..1958769(+) (sxy/tfoX) [Escherichia coli strain 2000-3039]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1