Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PGH47_RS13635 Genome accession   NZ_CP116353
Coordinates   3093326..3095059 (+) Length   577 a.a.
NCBI ID   WP_271663655.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 31     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088326..3100059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH47_RS13605 (PGH47_13605) - 3088690..3090477 (-) 1788 WP_271663653.1 cation:proton antiporter -
  PGH47_RS13625 (PGH47_13625) - 3091213..3091521 (+) 309 WP_125525786.1 YtxH domain-containing protein -
  PGH47_RS13630 (PGH47_13630) - 3091673..3093127 (+) 1455 WP_271663654.1 FGGY family carbohydrate kinase -
  PGH47_RS13635 (PGH47_13635) rcrP 3093326..3095059 (+) 1734 WP_271663655.1 ABC transporter ATP-binding protein Regulator
  PGH47_RS13640 (PGH47_13640) rcrQ 3095059..3096987 (+) 1929 WP_271663656.1 ABC transporter ATP-binding protein Regulator
  PGH47_RS13645 (PGH47_13645) - 3097091..3098395 (-) 1305 WP_271663657.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62659.74 Da        Isoelectric Point: 6.5097

>NTDB_id=709519 PGH47_RS13635 WP_271663655.1 3093326..3095059(+) (rcrP) [Streptomyces sp. HUAS 31]
MLIRLLRTHLSPYRKPIALLVLLQFLQTCATLYLPTLNADIIDKGVVNGDTGYILSYGALMIGISLAQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGISVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQSRFQKANAGLTDMALGTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVRELRRHGHLEIQGGGFRYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGRVLVDGEDVA
RIDPQLLAKTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKEFVERLEGGLNAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALQRETSEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=709519 PGH47_RS13635 WP_271663655.1 3093326..3095059(+) (rcrP) [Streptomyces sp. HUAS 31]
GTGCTCATACGACTTCTGCGGACCCACCTCAGTCCGTACCGAAAACCCATCGCCTTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACTCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAAGGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTCTACTACGGCGCC
CGCACCGCCTCGGCGCTCGGCCGGGACGTACGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGTGAGCTCGG
CCACTTCGGCGCGCCGTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGGATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTGGTGCCCACCCTCGGCATCAGCGTGACCCTGATCGTGCGTCGGCTGCGGCCGCTGTTCCGGACCATGCA
GGTGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTGCGCGACG
AGTACGAGCAGAGCCGGTTCCAGAAGGCCAACGCCGGGCTGACCGACATGGCGCTGGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTGTGGTTCGGCGCCCACCGCATCGACTCGGG
CGGCATGCAGATCGGTGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCTCCTCCAGCGTGGTGCCG
CCGACCGCGCCGGTGCGGGAGCTGCGCCGGCACGGTCATCTGGAGATCCAGGGCGGCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGTCGATCGACCTGGTCGCGCGGCCGGGTGAGACGACGGCCGTGATCGGCTCGACGGGCAGCGGCA
AGTCGACCCTGCTGGGGCTGGTCCCCCGGCTGTTCGACGCTACCGACGGCCGGGTGCTGGTGGACGGGGAGGACGTGGCG
AGGATCGACCCGCAGCTCCTCGCGAAGACCGTCGGCCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGGACGGTGGCGAC
CAACCTCCGCTACGGCAATCCGGAGGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGCGTCTGGAGGGCGGGCTGAACGCGCCCGTAGCCCAGGGCGGCACGAACGTCTCGGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCCGCCCTGCGCGCCGCGCTCCAGCGTGAGACGTCCGAGGCGACCGTCGTCATCGTCGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTGGTGCTGGACGAGGGCCGGGTCGTCGGCACGGGCCGGCACCACGAACTCATGGCGGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.86

100

0.39