Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   K6J66_RS00260 Genome accession   NZ_AP018771
Coordinates   56162..56878 (-) Length   238 a.a.
NCBI ID   WP_038440113.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-8 isolate 10H27     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51162..61878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J66_RS00240 (CHBNII8_00480) nrdR 51269..51718 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  K6J66_RS00245 (CHBNII8_00490) recC 51773..55153 (-) 3381 WP_038440110.1 exodeoxyribonuclease V subunit gamma -
  K6J66_RS00250 (CHBNII8_00500) comQ 55199..55486 (-) 288 WP_038440111.1 DUF5374 domain-containing protein Machinery gene
  K6J66_RS00255 (CHBNII8_00510) comP 55479..56162 (-) 684 WP_038440112.1 DUF2572 family protein Machinery gene
  K6J66_RS00260 (CHBNII8_00520) comO 56162..56878 (-) 717 WP_038440113.1 type II secretion system protein J Machinery gene
  K6J66_RS00265 (CHBNII8_00530) comN 56878..57390 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  K6J66_RS00270 (CHBNII8_00540) suhB 57590..58393 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  K6J66_RS00275 (CHBNII8_00550) nrfE 58503..60410 (+) 1908 WP_038440263.1 heme lyase NrfEFG subunit NrfE -
  K6J66_RS00280 (CHBNII8_00560) - 60410..60940 (+) 531 WP_038440114.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26667.96 Da        Isoelectric Point: 9.3691

>NTDB_id=70950 K6J66_RS00260 WP_038440113.1 56162..56878(-) (comO) [Haemophilus influenzae strain CHBN-II-8 isolate 10H27]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQASNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=70950 K6J66_RS00260 WP_038440113.1 56162..56878(-) (comO) [Haemophilus influenzae strain CHBN-II-8 isolate 10H27]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTCATTAGCCAAGAAGATAACGCCCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTTGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATTACTAAGCTACAATTTAATTGGTTAATCGAAGGAAAAGGATTAGAAATCAAGT
TAAAAGGAAATTTAAAACAAGCCTCAAACATCAGTTATGAAACCTCCCTTGTTGTTGCACTCTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.479

100

0.975

Multiple sequence alignment