Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NMT99_RS16295 Genome accession   NZ_CP101290
Coordinates   3125326..3125970 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain LjM2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3120326..3130970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS16260 mrpB 3121518..3121949 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NMT99_RS16265 mrpC 3121949..3122290 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NMT99_RS16270 mrpD 3122283..3123764 (+) 1482 WP_015714622.1 Na+/H+ antiporter subunit D -
  NMT99_RS16275 mrpE 3123770..3124246 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NMT99_RS16280 mrpF 3124246..3124530 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NMT99_RS16285 mnhG 3124514..3124888 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  NMT99_RS16290 yuxO 3124927..3125307 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  NMT99_RS16295 comA 3125326..3125970 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NMT99_RS16300 comP 3126051..3128363 (-) 2313 WP_069703660.1 histidine kinase Regulator
  NMT99_RS16305 comX 3128379..3128600 (-) 222 WP_014480704.1 competence pheromone ComX -
  NMT99_RS16310 - 3128602..3129465 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  NMT99_RS16315 degQ 3129651..3129791 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NMT99_RS16320 - 3130013..3130075 (+) 63 Protein_3156 hypothetical protein -
  NMT99_RS16325 - 3130253..3130621 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=709498 NMT99_RS16295 WP_003220716.1 3125326..3125970(-) (comA) [Bacillus subtilis strain LjM2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=709498 NMT99_RS16295 WP_003220716.1 3125326..3125970(-) (comA) [Bacillus subtilis strain LjM2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1