Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NMT99_RS14315 Genome accession   NZ_CP101290
Coordinates   2737162..2737908 (-) Length   248 a.a.
NCBI ID   WP_072692713.1    Uniprot ID   -
Organism   Bacillus subtilis strain LjM2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2732162..2742908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS14290 mreC 2732571..2733443 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  NMT99_RS14295 mreB 2733474..2734487 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NMT99_RS14300 radC 2734579..2735274 (-) 696 WP_015251546.1 DNA repair protein RadC -
  NMT99_RS14305 maf 2735311..2735880 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  NMT99_RS14310 spoIIB 2736033..2737028 (-) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  NMT99_RS14315 comC 2737162..2737908 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  NMT99_RS14320 folC 2738050..2739342 (-) 1293 WP_069703830.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NMT99_RS14325 valS 2739402..2742044 (-) 2643 WP_003229639.1 valine--tRNA ligase -
  NMT99_RS14330 - 2742492..2742683 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=709493 NMT99_RS14315 WP_072692713.1 2737162..2737908(-) (comC) [Bacillus subtilis strain LjM2]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPATELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=709493 NMT99_RS14315 WP_072692713.1 2737162..2737908(-) (comC) [Bacillus subtilis strain LjM2]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAACAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992