Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PH604_RS10950 Genome accession   NZ_CP116342
Coordinates   2082947..2083915 (-) Length   322 a.a.
NCBI ID   WP_003696522.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SE690.     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2077947..2088915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH604_RS10925 (PH604_10905) - 2078489..2079796 (-) 1308 WP_050161591.1 YadA-like family protein -
  PH604_RS10930 (PH604_10910) - 2079782..2080435 (+) 654 WP_272656364.1 IS1595 family transposase -
  PH604_RS10935 (PH604_10915) - 2080470..2081228 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  PH604_RS10940 (PH604_10920) - 2081312..2081938 (-) 627 WP_003690385.1 FmdE family protein -
  PH604_RS10945 (PH604_10925) - 2081983..2082957 (-) 975 WP_048339652.1 iron chelate uptake ABC transporter family permease subunit -
  PH604_RS10950 (PH604_10930) ceuB 2082947..2083915 (-) 969 WP_003696522.1 ABC transporter permease Machinery gene
  PH604_RS10955 (PH604_10935) - 2083934..2084125 (-) 192 WP_162098110.1 hypothetical protein -
  PH604_RS10960 (PH604_10940) - 2084143..2085114 (-) 972 WP_003699354.1 siderophore ABC transporter substrate-binding protein -
  PH604_RS10965 (PH604_10945) fetA 2085419..2087560 (-) 2142 WP_272656679.1 TonB-dependent siderophore receptor FetA/FrpB -
  PH604_RS10970 (PH604_10950) - 2088066..2088356 (+) 291 WP_002214868.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34402.68 Da        Isoelectric Point: 10.5988

>NTDB_id=709490 PH604_RS10950 WP_003696522.1 2082947..2083915(-) (ceuB) [Neisseria gonorrhoeae strain SE690.]
MTAKPFSLNLANLLLPAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGSSMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=709490 PH604_RS10950 WP_003696522.1 2082947..2083915(-) (ceuB) [Neisseria gonorrhoeae strain SE690.]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAGCAAGTGATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCTCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAAACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388