Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NMT99_RS12720 Genome accession   NZ_CP101290
Coordinates   2468789..2469556 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain LjM2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2463789..2474556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS12700 ppsR 2463963..2464775 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  NMT99_RS12705 ccpN 2464801..2465439 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  NMT99_RS12710 glyS 2465572..2467611 (-) 2040 WP_029726706.1 glycine--tRNA ligase subunit beta -
  NMT99_RS12715 glyQ 2467604..2468491 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  NMT99_RS12720 recO 2468789..2469556 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  NMT99_RS12725 yqzL 2469593..2469736 (-) 144 WP_003230053.1 YqzL family protein -
  NMT99_RS12730 era 2469884..2470789 (-) 906 WP_003230051.1 GTPase Era -
  NMT99_RS12735 - 2470770..2471180 (-) 411 WP_003230049.1 cytidine deaminase -
  NMT99_RS12740 unpK 2471299..2471670 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  NMT99_RS12745 ybeY 2471651..2472124 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  NMT99_RS12750 pgpH 2472125..2474260 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=709485 NMT99_RS12720 WP_003230055.1 2468789..2469556(-) (recO) [Bacillus subtilis strain LjM2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=709485 NMT99_RS12720 WP_003230055.1 2468789..2469556(-) (recO) [Bacillus subtilis strain LjM2]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1