Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NMT99_RS12190 Genome accession   NZ_CP101290
Coordinates   2378896..2379699 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain LjM2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2373896..2384699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS12165 glpQB 2375043..2375774 (-) 732 WP_069703866.1 glycerophosphodiester phosphodiesterase -
  NMT99_RS12170 yqiI 2375853..2376473 (-) 621 WP_080477816.1 N-acetylmuramoyl-L-alanine amidase -
  NMT99_RS12175 yqiH 2376488..2376781 (-) 294 WP_003230284.1 lipoprotein -
  NMT99_RS12180 - 2377089..2377241 (+) 153 WP_014480226.1 hypothetical protein -
  NMT99_RS12185 yqiG 2377314..2378432 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  NMT99_RS12190 spo0A 2378896..2379699 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NMT99_RS12195 spoIVB 2379975..2381255 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  NMT99_RS12200 recN 2381429..2383159 (-) 1731 WP_259596877.1 DNA repair protein RecN Machinery gene
  NMT99_RS12205 argR 2383196..2383645 (-) 450 WP_003230265.1 arginine repressor ArgR -
  NMT99_RS12210 yqxC 2383743..2384588 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=709474 NMT99_RS12190 WP_003226427.1 2378896..2379699(-) (spo0A) [Bacillus subtilis strain LjM2]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=709474 NMT99_RS12190 WP_003226427.1 2378896..2379699(-) (spo0A) [Bacillus subtilis strain LjM2]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1