Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NMT99_RS11200 Genome accession   NZ_CP101290
Coordinates   2201634..2202254 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain LjM2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2196634..2207254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS11160 ptsA 2197765..2198271 (-) 507 WP_069703931.1 PTS glucose transporter subunit IIA -
  NMT99_RS11165 ypqA 2198409..2198828 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  NMT99_RS11170 sppG 2198849..2199226 (-) 378 WP_014477159.1 YppG family protein -
  NMT99_RS11175 yppF 2199414..2199602 (+) 189 WP_003230690.1 YppF family protein -
  NMT99_RS11180 yppE 2199641..2200012 (-) 372 WP_015714151.1 YppE family protein -
  NMT99_RS11185 yppD 2200058..2200303 (-) 246 WP_015251831.1 YppD family protein -
  NMT99_RS11190 sspM 2200502..2200606 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NMT99_RS11195 yppC 2200631..2201593 (-) 963 WP_032729081.1 DUF2515 domain-containing protein -
  NMT99_RS11200 recU 2201634..2202254 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NMT99_RS11205 ponA 2202276..2205020 (+) 2745 WP_069703902.1 PBP1A family penicillin-binding protein -
  NMT99_RS11210 ypoC 2205096..2205590 (-) 495 WP_029726783.1 YpoC family protein -
  NMT99_RS11215 nth 2205587..2206246 (-) 660 WP_029726782.1 endonuclease III -
  NMT99_RS11220 dnaD 2206265..2206963 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=709473 NMT99_RS11200 WP_004399067.1 2201634..2202254(+) (recU) [Bacillus subtilis strain LjM2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=709473 NMT99_RS11200 WP_004399067.1 2201634..2202254(+) (recU) [Bacillus subtilis strain LjM2]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1