Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NMT99_RS07820 Genome accession   NZ_CP101290
Coordinates   1493852..1494130 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain LjM2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488852..1499130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS07800 panEB 1490040..1490951 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  NMT99_RS07805 ampS 1490985..1492217 (-) 1233 WP_003232341.1 aminopeptidase -
  NMT99_RS07810 ykpC 1492326..1492460 (-) 135 WP_003238865.1 protein YkpC -
  NMT99_RS07815 mreBH 1492561..1493568 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  NMT99_RS07820 abrB 1493852..1494130 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NMT99_RS07825 kinC 1494320..1495606 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  NMT99_RS07830 ykqA 1495622..1496449 (+) 828 WP_046160350.1 gamma-glutamylcyclotransferase -
  NMT99_RS07835 ktrC 1496512..1497177 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NMT99_RS07840 ade 1497333..1499066 (+) 1734 WP_015715822.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=709468 NMT99_RS07820 WP_003244728.1 1493852..1494130(+) (abrB) [Bacillus subtilis strain LjM2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=709468 NMT99_RS07820 WP_003244728.1 1493852..1494130(+) (abrB) [Bacillus subtilis strain LjM2]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576