Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NMT99_RS07600 Genome accession   NZ_CP101290
Coordinates   1453896..1454360 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain LjM2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1448896..1459360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS07580 kinA 1449363..1451183 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  NMT99_RS07585 dapX 1451193..1452374 (-) 1182 WP_014476653.1 aminotransferase A -
  NMT99_RS07590 - 1452576..1452737 (-) 162 WP_003245246.1 hypothetical protein -
  NMT99_RS07595 cheV 1452941..1453852 (+) 912 WP_029727006.1 chemotaxis protein CheV -
  NMT99_RS07600 kre 1453896..1454360 (-) 465 WP_003232406.1 YkyB family protein Regulator
  NMT99_RS07605 ykuC 1454486..1455778 (-) 1293 WP_029727007.1 MFS transporter -
  NMT99_RS07610 ltdD 1455854..1456348 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  NMT99_RS07615 ppeE 1456400..1457263 (-) 864 WP_029727008.1 metallophosphoesterase -
  NMT99_RS07620 fadH 1457406..1458170 (+) 765 WP_029727009.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=709466 NMT99_RS07600 WP_003232406.1 1453896..1454360(-) (kre) [Bacillus subtilis strain LjM2]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=709466 NMT99_RS07600 WP_003232406.1 1453896..1454360(-) (kre) [Bacillus subtilis strain LjM2]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1