Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   NMT99_RS06095 Genome accession   NZ_CP101290
Coordinates   1182508..1183461 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain LjM2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177508..1188461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS06070 argF 1179340..1180299 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  NMT99_RS06075 yjzC 1180385..1180564 (+) 180 WP_003245356.1 YjzC family protein -
  NMT99_RS06080 yjzD 1180610..1180795 (-) 186 WP_003245236.1 YjzD family protein -
  NMT99_RS06085 - 1181044..1181778 (+) 735 WP_003245223.1 hypothetical protein -
  NMT99_RS06090 - 1181860..1182417 (+) 558 WP_003232974.1 hypothetical protein -
  NMT99_RS06095 med 1182508..1183461 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  NMT99_RS06100 comZ 1183476..1183667 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  NMT99_RS06105 yjzB 1183697..1183936 (-) 240 WP_003232972.1 spore coat protein YjzB -
  NMT99_RS06110 fabH 1184101..1185039 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  NMT99_RS06115 fabF 1185062..1186303 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  NMT99_RS06120 yjaZ 1186379..1187164 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  NMT99_RS06125 appD 1187356..1188342 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=709457 NMT99_RS06095 WP_003245494.1 1182508..1183461(+) (med) [Bacillus subtilis strain LjM2]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=709457 NMT99_RS06095 WP_003245494.1 1182508..1183461(+) (med) [Bacillus subtilis strain LjM2]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1