Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NMT99_RS05640 Genome accession   NZ_CP101290
Coordinates   1092992..1093570 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain LjM2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087992..1098570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS21245 - 1088503..1089018 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  NMT99_RS21250 - 1089259..1089885 (-) 627 Protein_1042 protoglobin domain-containing protein -
  NMT99_RS05625 comW 1089940..1091469 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  NMT99_RS05630 yhxC 1091581..1092438 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  NMT99_RS05635 yhzC 1092466..1092699 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NMT99_RS05640 comK 1092992..1093570 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  NMT99_RS05645 yhxD 1093617..1094516 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  NMT99_RS05650 yhjA 1094733..1095002 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  NMT99_RS05655 yhjB 1095046..1096515 (-) 1470 WP_029726292.1 sodium:solute symporter -
  NMT99_RS05660 yhjC 1096512..1096712 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NMT99_RS05665 - 1096920..1097282 (-) 363 WP_003233132.1 hypothetical protein -
  NMT99_RS05670 yhjE 1097434..1098057 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  NMT99_RS05675 lepB 1098059..1098565 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=709454 NMT99_RS05640 WP_029317573.1 1092992..1093570(+) (comK) [Bacillus subtilis strain LjM2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=709454 NMT99_RS05640 WP_029317573.1 1092992..1093570(+) (comK) [Bacillus subtilis strain LjM2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995