Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NMT99_RS00245 Genome accession   NZ_CP101290
Coordinates   44353..44643 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain LjM2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39353..49643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS00205 darA 39376..39705 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  NMT99_RS00210 yaaR 39718..40158 (+) 441 WP_009966249.1 YaaR family protein -
  NMT99_RS00215 holB 40170..41159 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  NMT99_RS00220 ricT 41162..41989 (+) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  NMT99_RS00225 yabA 42004..42363 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  NMT99_RS00230 trmNF 42422..43165 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NMT99_RS00235 yazA 43152..43451 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  NMT99_RS00240 rsmI 43426..44304 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NMT99_RS00245 abrB 44353..44643 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  NMT99_RS00250 metG 45138..47132 (+) 1995 WP_069703810.1 methionine--tRNA ligase -
  NMT99_RS00255 dayD 47212..47979 (+) 768 WP_029726393.1 TatD family hydrolase -
  NMT99_RS00260 yabE 48135..49448 (+) 1314 WP_029726392.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=709438 NMT99_RS00245 WP_003226760.1 44353..44643(-) (abrB) [Bacillus subtilis strain LjM2]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=709438 NMT99_RS00245 WP_003226760.1 44353..44643(-) (abrB) [Bacillus subtilis strain LjM2]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1