Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NML17_RS08230 Genome accession   NZ_CP101274
Coordinates   1713012..1713641 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC21Z-014     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1708012..1718641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML17_RS08210 (NML17_08210) ycbZ 1708402..1710162 (-) 1761 WP_074524600.1 Lon protease family protein -
  NML17_RS08215 (NML17_08215) matP 1710348..1710800 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NML17_RS08220 (NML17_08220) ompA 1710875..1711927 (-) 1053 WP_000750419.1 porin OmpA -
  NML17_RS08225 (NML17_08225) sulA 1712284..1712793 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NML17_RS08230 (NML17_08230) sxy/tfoX 1713012..1713641 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NML17_RS08235 (NML17_08235) yccS 1713604..1715766 (-) 2163 WP_254815526.1 YccS family putative transporter -
  NML17_RS08240 (NML17_08240) yccF 1715776..1716222 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NML17_RS08245 (NML17_08245) helD 1716345..1718399 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=709412 NML17_RS08230 WP_000839153.1 1713012..1713641(+) (sxy/tfoX) [Escherichia coli strain EC21Z-014]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=709412 NML17_RS08230 WP_000839153.1 1713012..1713641(+) (sxy/tfoX) [Escherichia coli strain EC21Z-014]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1