Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PH192_RS17915 Genome accession   NZ_CP116241
Coordinates   3698141..3699574 (-) Length   477 a.a.
NCBI ID   WP_000809047.1    Uniprot ID   -
Organism   Escherichia coli strain 7.1994/NIST0056     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3693141..3704574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH192_RS17880 (PH192_17875) elbB 3693832..3694485 (+) 654 WP_001299134.1 isoprenoid biosynthesis glyoxalase ElbB -
  PH192_RS17885 (PH192_17880) mtgA 3694482..3695210 (+) 729 WP_000047091.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PH192_RS17890 (PH192_17885) yrbL 3695207..3695839 (-) 633 WP_000620405.1 PhoP regulatory network protein YrbL -
  PH192_RS17895 (PH192_17890) npr 3696053..3696325 (-) 273 WP_000216791.1 PTS phosphocarrier protein NPr -
  PH192_RS17900 (PH192_17895) rapZ 3696322..3697176 (-) 855 WP_000243741.1 RNase adapter RapZ -
  PH192_RS17905 (PH192_17900) ptsN 3697222..3697713 (-) 492 WP_000183676.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PH192_RS17910 (PH192_17905) hpf 3697831..3698118 (-) 288 WP_001176599.1 ribosome hibernation promoting factor -
  PH192_RS17915 (PH192_17910) rpoN/rpoN1 3698141..3699574 (-) 1434 WP_000809047.1 RNA polymerase factor sigma-54 Machinery gene
  PH192_RS17920 (PH192_17915) lptB 3699622..3700347 (-) 726 WP_000224099.1 LPS export ABC transporter ATP-binding protein -
  PH192_RS17925 (PH192_17920) lptA 3700354..3700911 (-) 558 WP_000669785.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  PH192_RS17930 (PH192_17925) lptC 3700880..3701455 (-) 576 WP_000030537.1 LPS export ABC transporter periplasmic protein LptC -
  PH192_RS17935 (PH192_17930) kdsC 3701452..3702018 (-) 567 WP_000030005.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  PH192_RS17940 (PH192_17935) kdsD 3702039..3703025 (-) 987 WP_001295557.1 arabinose-5-phosphate isomerase KdsD -
  PH192_RS17945 (PH192_17940) yrbG 3703039..3704016 (-) 978 WP_151397281.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54051.83 Da        Isoelectric Point: 4.3447

>NTDB_id=709402 PH192_RS17915 WP_000809047.1 3698141..3699574(-) (rpoN/rpoN1) [Escherichia coli strain 7.1994/NIST0056]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPE
ELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDDDSQFIR
SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=709402 PH192_RS17915 WP_000809047.1 3698141..3699574(-) (rpoN/rpoN1) [Escherichia coli strain 7.1994/NIST0056]
ATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCGATGACGCCACAGCTCCAACAGGCAATTCGTCTGTTGCA
GTTGTCGACGCTGGAACTTCAGCAGGAGCTACAGCAGGCGCTGGAGAGTAATCCGCTGCTTGAGCAAATCGACACTCATG
AAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAA
GAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGA
TGAGCTGCCGGTCTATCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTCGAGCTGACACCGTTTT
CCGACACTGATCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGACACCGGTTATCTGACTGTCCCGCTGGAAGAT
ATTCTCGAAAGTATGGGCGATGAAGAGATCGACATCGACGAGGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCC
GGTCGGTGTAGCGGCAAAAGATCTGCGTGACTGCCTGCTAATCCAACTCTCCCAATTCGATAAAACCACGCCGTGGCTGG
AAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGT
CTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCCGCGCCCCGGGCAGTCGATCCAGACTGG
CGAACCTGAGTATGTCATTCCAGATGTGCTGGTGCGTAAGCATAACGGTCACTGGACGGTAGAACTCAACAGTGACAGCA
TTCCGCGTCTGCAAATCAACCAGCACTACGCCTCGATGTGCAATAACGCGCGCAACGATGATGACAGCCAGTTTATCCGC
AGCAATCTGCAGGATGCCAAATGGTTGATCAAGAGTCTGGAAAGCCGTAACGATACGCTACTGCGCGTGAGTCGCTGTAT
CGTTGAACAGCAGCAAGCCTTCTTTGAGCAAGGTGAAGAATATATGAAACCGATGGTACTGGCCGATATCGCCCAGGCTG
TCGAAATGCATGAATCGACGATATCTCGCGTGACCACGCAAAAATACCTGCATAGTCCACGAGGCATTTTTGAACTGAAG
TATTTCTTTTCCAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCACTGGTGAAGAAATT
AATCGCGGCGGAAAACCCAGCGAAACCGTTGAGCGACAGCAAGTTAACCTCTTTACTGTCGGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAGCTCGTTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.223

100

0.465