Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NML18_RS14770 Genome accession   NZ_CP101269
Coordinates   2989123..2989752 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC21Z-048     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2984123..2994752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML18_RS14755 (NML18_14755) helD 2984365..2986419 (-) 2055 WP_104725599.1 DNA helicase IV -
  NML18_RS14760 (NML18_14760) yccF 2986542..2986988 (+) 447 WP_001261231.1 YccF domain-containing protein -
  NML18_RS14765 (NML18_14765) yccS 2986998..2989160 (+) 2163 WP_000875044.1 YccS family putative transporter -
  NML18_RS14770 (NML18_14770) sxy/tfoX 2989123..2989752 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NML18_RS14775 (NML18_14775) sulA 2989971..2990480 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NML18_RS14780 (NML18_14780) ompA 2990837..2991889 (+) 1053 WP_000750419.1 porin OmpA -
  NML18_RS14785 (NML18_14785) matP 2991964..2992416 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  NML18_RS14790 (NML18_14790) - 2992602..2993783 (+) 1182 Protein_2909 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=709399 NML18_RS14770 WP_000839153.1 2989123..2989752(-) (sxy/tfoX) [Escherichia coli strain EC21Z-048]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=709399 NML18_RS14770 WP_000839153.1 2989123..2989752(-) (sxy/tfoX) [Escherichia coli strain EC21Z-048]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1