Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   H7680_RS03885 Genome accession   NZ_AP023394
Coordinates   754546..757770 (+) Length   1074 a.a.
NCBI ID   WP_015057478.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 749546..762770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7680_RS03860 (SDSE159_07240) - 750768..751145 (+) 378 WP_003057473.1 OsmC family protein -
  H7680_RS03865 (SDSE159_07250) - 751138..751524 (+) 387 WP_139818739.1 DUF1722 domain-containing protein -
  H7680_RS03870 (SDSE159_07260) - 751597..752673 (+) 1077 WP_003057439.1 ABC transporter permease -
  H7680_RS03875 (SDSE159_07270) - 752683..753351 (+) 669 WP_003057498.1 ABC transporter ATP-binding protein -
  H7680_RS03880 (SDSE159_07280) - 753445..754371 (-) 927 WP_003057448.1 neutral zinc metallopeptidase -
  H7680_RS03885 (SDSE159_07290) rexB 754546..757770 (+) 3225 WP_015057478.1 ATP-dependent nuclease subunit B Machinery gene
  H7680_RS03890 (SDSE159_07300) rexA 757770..761399 (+) 3630 WP_281429801.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  H7680_RS03895 (SDSE159_07310) - 761559..762674 (+) 1116 WP_003057424.1 aminotransferase -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123488.43 Da        Isoelectric Point: 5.2453

>NTDB_id=70934 H7680_RS03885 WP_015057478.1 754546..757770(+) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MKLIYTEMTYSMTDILVAEARQAASRGYRVFYLAPNSLSFEKEREVLNLLPERGSFSITVTRFAQMARYFTFSNSESKQA
LDETALAMIFYRVLMQLTPEDLPVYGRLKDDPAFIKQLIDLYQELKTANLSVYELTELDTPGKQEDLIRIISLAEELMTQ
QDYHQDSALMSFAKTIETGQLDEQLSKTVLVIDGFSRFSAEEDYLLSLLNNKCQEIVIGSYISQKAYQKPFIKGNIYEAS
IQFLQGLAEQYKTKPIYSQSEKVFAPSFSRVTQLFEASHDFSQVDWQLEEKDKEDIYLWQSHQQKEEIEHVAKAIREKLY
EGYRYKDMLVLLGDVDAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGRFAD
SDVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNEVREAVFSSLQALFKSQKQLGTSLLDKLMTFFKDVQLAENM
KSLGQNELEIEKNEEVWKTFTGVLTSFYQIFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFV
YAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSKKNHQTALSLLNAATQELVLSVPAVVNEFSDDLS
PYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHHQVTLPMLD
DHLVTKPLASEVIEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAAS
FDSKLAQAIHQTNQEKEFQYIYQDSAEDRFSLDLLEDIAKSTASILRLNQNMTVSRQEEPFALHVTDQVVVHGIIDRIDQ
LSDGSLGIVDYKSSANQFDIGKFYNGLSPQLVTYLAALQQQLGPDDLGHLFGAMYLHLQEPKLDLASFKALDDKLVESIY
KELTYKGIFLESEKEYLANGAYQTRNALYSTEELQTLLTYNALLYKKAAEQIKKGHFVINPYTSDGKSVQGEQLKAITRF
EADLDLGQARHLVTLPAKDKRQQFLTLMRKEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=70934 H7680_RS03885 WP_015057478.1 754546..757770(+) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGAAACTAATTTATACAGAAATGACCTATTCAATGACAGACATTTTGGTGGCTGAAGCAAGGCAGGCTGCCTCTCGAGG
TTACCGTGTCTTTTACCTTGCTCCAAACTCTCTCTCGTTTGAAAAGGAAAGAGAAGTATTGAACTTGCTACCAGAACGAG
GGTCTTTCTCCATTACCGTGACGCGTTTTGCTCAGATGGCAAGGTATTTTACATTCTCTAACTCTGAGTCAAAACAAGCC
TTAGACGAGACAGCCTTAGCCATGATTTTTTACCGCGTCTTAATGCAGTTAACCCCTGAAGATCTTCCTGTTTATGGTCG
CTTGAAAGACGATCCGGCTTTTATTAAGCAGCTAATTGATCTCTATCAAGAATTAAAAACGGCTAACCTTAGTGTCTATG
AGTTAACCGAGTTAGATACTCCCGGTAAACAAGAAGACCTAATAAGGATTATCTCCCTTGCCGAAGAACTCATGACTCAG
CAAGATTACCATCAAGACAGTGCGTTGATGTCCTTTGCTAAAACCATTGAAACAGGTCAATTGGACGAACAACTATCAAA
AACAGTACTAGTTATTGATGGGTTTTCTCGTTTTTCTGCTGAAGAAGATTACCTATTATCTCTTCTTAACAACAAGTGTC
AAGAGATTGTGATAGGAAGTTATATTAGTCAGAAAGCCTACCAAAAACCGTTTATTAAAGGAAATATTTATGAGGCCAGT
ATCCAATTTTTGCAAGGGCTTGCTGAACAGTACAAGACAAAACCGATTTATTCTCAATCGGAAAAGGTTTTCGCGCCGTC
TTTTTCAAGAGTGACTCAGTTATTTGAAGCTAGCCATGATTTTTCTCAAGTAGATTGGCAATTGGAAGAAAAAGATAAAG
AAGACATTTACCTCTGGCAAAGTCATCAGCAAAAAGAAGAGATAGAGCATGTTGCTAAGGCTATTCGAGAAAAATTGTAT
GAAGGTTATCGCTATAAGGACATGTTGGTCTTGCTAGGAGATGTGGACGCCTACCAGTTGCAAATTGGTCCCATTTTTGA
CAAATTTGAGATTCCTTACTATTTAGGGAAGGCAGAACCCATGACCGCTCATCCCTTAGTGCAATTTATAGAATCTTTAG
AGCGGAGCCAGCGCTATAATTGGCGTCGTGAAGATATTTTAAACCTGCTCAAATCAGGACTTTTTGGAAGGTTTGCCGAT
AGTGACGTTGACCGCTTTGAAGAATACCTCCAATTTGCAGATATTAAAGGATTTACTAAATTTTCAAGGCCTTTTACGAT
TAATTCCTCTCGTCATTACCCATTAGAGTTGTTAAACGAGGTAAGAGAAGCTGTTTTTTCTTCGTTGCAAGCCTTATTTA
AGAGTCAAAAACAATTGGGAACGTCATTGCTAGATAAATTGATGACCTTTTTTAAAGACGTTCAGTTAGCAGAAAATATG
AAAAGCCTGGGCCAAAATGAGCTAGAAATCGAGAAAAATGAGGAAGTTTGGAAAACATTTACCGGCGTGTTAACCTCTTT
TTACCAGATTTTTGGTCAGGAAAAATTGAAACTGGCGGACTGTCTTTCCTTAATCAAAATGGGAATGCAGTCAGCCCACT
ATCGTATTGTTCCAGCTACTTTAGATGTTGTTTCTATCAAATCCTATGATTTGGTGCAACCTCACTCAAAACCTTTTGTT
TATGCTATTGGTCTTACGCAATCCCATTTTCCAAAGCAAGTCAAAGAGACAGGGCTACTTTCTGATCAAGAACGGGCAAG
AATTAACGAAATCACTGATAGCTTCCAGCATTTTGACATTGGCAGTATCGAAAATAGCAAGAAAAATCATCAGACAGCTC
TTTCGCTTTTGAATGCAGCCACTCAAGAATTGGTCCTGAGTGTCCCAGCAGTAGTGAACGAATTTTCAGATGACTTGTCT
CCTTACCTCAAGGAATTGATGTCCTTTGGTCTTCCACTGATTGATAAAGGAAGCAATCGCTTTTCTTATGCTGCTAGTGA
TATTGGCAACTATAAGGCCCTTTTGTCACGTTTAGTTGACCTTAATCGAGAAGCTATAGTAGCTGACATGACCGAACAGG
ACAAGACTTTTTGGACGGTTGCCCTTCGCTATCTCCGACGACAATTAAGACATCATCAAGTCACACTTCCTATGCTAGAT
GACCATTTGGTGACGAAACCTCTAGCCTCCGAAGTTATTGAGGCACGTTTTCCAAGCGATAGACCGCTTAGACTATCATC
GACTGCTCTGACTGTTTTTTATAATAACCAGTACAAGTATTTTTTGCAGTATGTCCTAGGGCTACAAGAAGCCGAATCCA
TTCATCCTGATGCCCGCATTCATGGGCAATATTTACATCGGGTATTTGAATTGGTGATGACGGATCACACAGCAGCTTCC
TTTGACAGCAAATTGGCGCAAGCCATTCATCAAACTAACCAAGAAAAAGAGTTTCAATACATCTATCAAGACAGTGCTGA
AGATCGTTTCAGTTTAGACTTGCTTGAAGATATTGCTAAGTCAACCGCTTCTATTTTGCGTCTTAATCAGAATATGACTG
TCAGTCGACAAGAAGAACCTTTTGCCCTTCACGTGACAGATCAGGTAGTAGTCCATGGGATAATTGACCGGATTGACCAG
TTAAGTGATGGGAGTCTAGGGATTGTTGATTATAAATCCAGTGCGAATCAGTTTGATATCGGGAAATTTTACAATGGGTT
AAGCCCACAACTTGTTACTTATCTGGCTGCTTTGCAGCAACAACTTGGACCAGATGATTTAGGGCACTTATTTGGTGCCA
TGTACTTGCATTTGCAAGAGCCTAAGTTGGACTTAGCATCTTTCAAAGCACTTGATGATAAACTAGTTGAAAGTATTTAT
AAAGAATTGACCTATAAAGGAATCTTTTTAGAGTCTGAAAAAGAATATTTAGCAAATGGTGCTTACCAGACGCGAAATGC
ACTTTATTCCACTGAAGAGTTACAAACCCTCTTGACTTATAATGCTCTTCTTTACAAGAAAGCAGCAGAGCAGATTAAGA
AAGGGCATTTTGTCATTAACCCTTATACAAGTGATGGGAAGTCTGTTCAAGGAGAACAACTCAAGGCTATTACACGTTTT
GAGGCTGATCTTGATTTGGGCCAAGCAAGGCATCTTGTAACGCTCCCTGCCAAAGATAAGCGCCAGCAGTTTTTAACGTT
AATGAGAAAGGAGGATAACCTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.518

100

0.434