Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NML22_RS13925 Genome accession   NZ_CP101245
Coordinates   2854082..2854711 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC21Z-097     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2849082..2859711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML22_RS13910 (NML22_13895) helD 2849324..2851378 (-) 2055 WP_000420536.1 DNA helicase IV -
  NML22_RS13915 (NML22_13900) yccF 2851501..2851947 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NML22_RS13920 (NML22_13905) yccS 2851957..2854119 (+) 2163 WP_000875023.1 YccS family putative transporter -
  NML22_RS13925 (NML22_13910) sxy/tfoX 2854082..2854711 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NML22_RS13930 (NML22_13915) sulA 2854930..2855439 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NML22_RS13935 (NML22_13920) ompA 2855796..2856848 (+) 1053 WP_001361736.1 porin OmpA -
  NML22_RS13940 (NML22_13925) matP 2856924..2857376 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NML22_RS13945 (NML22_13930) ycbZ 2857562..2859322 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=709312 NML22_RS13925 WP_000839153.1 2854082..2854711(-) (sxy/tfoX) [Escherichia coli strain EC21Z-097]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=709312 NML22_RS13925 WP_000839153.1 2854082..2854711(-) (sxy/tfoX) [Escherichia coli strain EC21Z-097]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1