Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NML24_RS13490 Genome accession   NZ_CP101233
Coordinates   2767083..2767712 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC21Z-137     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2762083..2772712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML24_RS13475 (NML24_13455) helD 2762325..2764379 (-) 2055 WP_001295354.1 DNA helicase IV -
  NML24_RS13480 (NML24_13460) yccF 2764502..2764948 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NML24_RS13485 (NML24_13465) yccS 2764958..2767120 (+) 2163 WP_133301049.1 YccS family putative transporter -
  NML24_RS13490 (NML24_13470) sxy/tfoX 2767083..2767712 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NML24_RS13495 (NML24_13475) sulA 2767931..2768440 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  NML24_RS13500 (NML24_13480) ompA 2768797..2769837 (+) 1041 WP_254841571.1 porin OmpA -
  NML24_RS13505 (NML24_13485) matP 2769913..2770365 (-) 453 WP_254841572.1 macrodomain Ter protein MatP -
  NML24_RS13510 (NML24_13490) ycbZ 2770551..2772311 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=709269 NML24_RS13490 WP_000839153.1 2767083..2767712(-) (sxy/tfoX) [Escherichia coli strain EC21Z-137]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=709269 NML24_RS13490 WP_000839153.1 2767083..2767712(-) (sxy/tfoX) [Escherichia coli strain EC21Z-137]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1