Detailed information NTG0709261

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PHA52_RS06840
• Genome accession: NZ_CP116237
• Coordinates: 1456036..1457040 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain MPAO1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1451036..1462040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PHA52_RS06810 (PHA52_06810)	fghA	1451128..1451979 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PHA52_RS06815 (PHA52_06815)	ispF	1452050..1452523 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PHA52_RS06820 (PHA52_06820)	truD	1452520..1453587 (+)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
PHA52_RS06825 (PHA52_06825)	surE	1453575..1454324 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PHA52_RS06830 (PHA52_06830)	-	1454357..1454992 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PHA52_RS06835 (PHA52_06835)	-	1455038..1455931 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PHA52_RS06840 (PHA52_06840)	rpoS	1456036..1457040 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PHA52_RS06845 (PHA52_06845)	fdxA	1457467..1457790 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PHA52_RS06850 (PHA52_06850)	mutS	1457857..1460424 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PHA52_RS06855 (PHA52_06855)	-	1460550..1461557 (-)	1008	WP_003113874.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=709261 PHA52_RS06840 WP_003113871.1 1456036..1457040(+) (rpoS) [Pseudomonas aeruginosa strain MPAO1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=709261 PHA52_RS06840 WP_003113871.1 1456036..1457040(+) (rpoS) [Pseudomonas aeruginosa strain MPAO1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653