Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NML25_RS08105 Genome accession   NZ_CP101222
Coordinates   1743614..1744243 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC21Z-144     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738614..1749243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML25_RS08085 (NML25_08085) ycbZ 1739004..1740764 (-) 1761 WP_000156479.1 Lon protease family protein -
  NML25_RS08090 (NML25_08090) matP 1740950..1741402 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NML25_RS08095 (NML25_08095) ompA 1741477..1742529 (-) 1053 WP_000750418.1 porin OmpA -
  NML25_RS08100 (NML25_08100) sulA 1742886..1743395 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  NML25_RS08105 (NML25_08105) sxy/tfoX 1743614..1744243 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NML25_RS08110 (NML25_08110) yccS 1744206..1746368 (-) 2163 WP_001550920.1 YccS family putative transporter -
  NML25_RS08115 (NML25_08115) yccF 1746378..1746824 (-) 447 WP_001261235.1 YccF domain-containing protein -
  NML25_RS08120 (NML25_08120) helD 1746947..1749001 (+) 2055 WP_021561301.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=709238 NML25_RS08105 WP_000839153.1 1743614..1744243(+) (sxy/tfoX) [Escherichia coli strain EC21Z-144]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=709238 NML25_RS08105 WP_000839153.1 1743614..1744243(+) (sxy/tfoX) [Escherichia coli strain EC21Z-144]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1