Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NML26_RS15265 Genome accession   NZ_CP101210
Coordinates   3106103..3106732 (-) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   A0A8S7S1H1
Organism   Escherichia coli strain EC21Z-147     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3101103..3111732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML26_RS15250 (NML26_15260) helD 3101345..3103399 (-) 2055 WP_001317751.1 DNA helicase IV -
  NML26_RS15255 (NML26_15265) yccF 3103522..3103968 (+) 447 WP_001261236.1 YccF domain-containing protein -
  NML26_RS15260 (NML26_15270) yccS 3103978..3106140 (+) 2163 WP_000875041.1 YccS family putative transporter -
  NML26_RS15265 (NML26_15275) sxy/tfoX 3106103..3106732 (-) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NML26_RS15270 (NML26_15280) sulA 3106951..3107460 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  NML26_RS15275 (NML26_15285) ompA 3107817..3108857 (+) 1041 WP_001314606.1 porin OmpA -
  NML26_RS15280 (NML26_15290) matP 3108933..3109385 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NML26_RS15285 (NML26_15295) ycbZ 3109571..3111331 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=709225 NML26_RS15265 WP_000699018.1 3106103..3106732(-) (sxy/tfoX) [Escherichia coli strain EC21Z-147]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=709225 NML26_RS15265 WP_000699018.1 3106103..3106732(-) (sxy/tfoX) [Escherichia coli strain EC21Z-147]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995