Detailed information NTG0709087

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIB63_RS17500
• Genome accession: NZ_CP116194
• Coordinates: 3565079..3566071 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-E1005
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3560079..3571071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIB63_RS17480 (PIB63_17480)	ygbM	3560710..3561486 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
PIB63_RS17485 (PIB63_17485)	ygbN	3561575..3562939 (+)	1365	WP_000104433.1	GntP family transporter	-
PIB63_RS17490 (PIB63_17490)	-	3563082..3564125 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
PIB63_RS17495 (PIB63_17495)	-	3564350..3564901 (+)	552	WP_001179442.1	flavodoxin family protein	-
PIB63_RS17500 (PIB63_17500)	rpoS	3565079..3566071 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIB63_RS17505 (PIB63_17505)	nlpD	3566134..3567228 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PIB63_RS17510 (PIB63_17510)	pcm	3567413..3568039 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
PIB63_RS17515 (PIB63_17515)	surE	3568033..3568794 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIB63_RS17520 (PIB63_17520)	truD	3568775..3569824 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
PIB63_RS17525 (PIB63_17525)	ispF	3569821..3570300 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIB63_RS17530 (PIB63_17530)	ispD	3570300..3571010 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=709087 PIB63_RS17500 WP_000081550.1 3565079..3566071(-) (rpoS) [Escherichia coli strain DETEC-E1005]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=709087 PIB63_RS17500 WP_000081550.1 3565079..3566071(-) (rpoS) [Escherichia coli strain DETEC-E1005]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715