Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PIB63_RS05845 Genome accession   NZ_CP116194
Coordinates   1217407..1218012 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DETEC-E1005     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1212407..1223012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB63_RS05815 (PIB63_05815) rsmS 1213112..1213273 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  PIB63_RS05820 (PIB63_05820) priC 1213287..1213814 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  PIB63_RS05825 (PIB63_05825) ybaN 1213884..1214261 (+) 378 WP_001188900.1 DUF454 family protein -
  PIB63_RS05830 (PIB63_05830) apt 1214414..1214965 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PIB63_RS05835 (PIB63_05835) dnaX 1215094..1217025 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  PIB63_RS05840 (PIB63_05840) ybaB 1217078..1217407 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PIB63_RS05845 (PIB63_05845) recR 1217407..1218012 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PIB63_RS05850 (PIB63_05850) htpG 1218122..1219996 (+) 1875 WP_271291446.1 molecular chaperone HtpG -
  PIB63_RS05855 (PIB63_05855) adk 1220177..1220821 (+) 645 WP_001313630.1 adenylate kinase -
  PIB63_RS05860 (PIB63_05860) hemH 1220953..1221915 (+) 963 WP_001250114.1 ferrochelatase -
  PIB63_RS05865 (PIB63_05865) aes 1221890..1222858 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=709057 PIB63_RS05845 WP_001195025.1 1217407..1218012(+) (recR) [Escherichia coli strain DETEC-E1005]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=709057 PIB63_RS05845 WP_001195025.1 1217407..1218012(+) (recR) [Escherichia coli strain DETEC-E1005]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443