Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NLJ82_RS09855 Genome accession   NZ_CP101135
Coordinates   1939449..1939736 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus paranthracis strain Bt C4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934449..1944736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLJ82_RS09835 (NLJ82_09835) - 1935624..1935821 (+) 198 WP_001048096.1 DUF4083 domain-containing protein -
  NLJ82_RS09840 (NLJ82_09840) - 1935853..1936314 (+) 462 WP_000035005.1 NUDIX hydrolase -
  NLJ82_RS09845 (NLJ82_09845) nadE 1936363..1937181 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  NLJ82_RS09850 (NLJ82_09850) - 1937451..1939332 (+) 1882 Protein_1857 FtsX-like permease family protein -
  NLJ82_RS09855 (NLJ82_09855) abrB 1939449..1939736 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NLJ82_RS09860 (NLJ82_09860) - 1940011..1940961 (+) 951 WP_001089036.1 serine protease -
  NLJ82_RS09865 (NLJ82_09865) - 1941170..1942273 (-) 1104 WP_000829434.1 ABC transporter ATP-binding protein -
  NLJ82_RS09870 (NLJ82_09870) - 1942540..1943403 (-) 864 WP_000615937.1 CdaR family transcriptional regulator -
  NLJ82_RS09875 (NLJ82_09875) - 1943472..1944332 (-) 861 WP_000064378.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=709029 NLJ82_RS09855 WP_000648330.1 1939449..1939736(+) (abrB) [Bacillus paranthracis strain Bt C4]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=709029 NLJ82_RS09855 WP_000648330.1 1939449..1939736(+) (abrB) [Bacillus paranthracis strain Bt C4]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516