Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NMK93_RS00835 Genome accession   NZ_CP101134
Coordinates   198077..199465 (+) Length   462 a.a.
NCBI ID   WP_185212910.1    Uniprot ID   -
Organism   Sphingobacterium sp. LZ7M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 193077..204465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK93_RS00805 - 193216..193671 (+) 456 WP_254526652.1 hypothetical protein -
  NMK93_RS00810 - 193755..195752 (+) 1998 WP_254526651.1 sensor histidine kinase -
  NMK93_RS00815 - 195852..196325 (+) 474 WP_185212906.1 DUF4293 domain-containing protein -
  NMK93_RS00820 - 196335..196808 (+) 474 WP_185215780.1 hypothetical protein -
  NMK93_RS00825 - 196872..197501 (-) 630 WP_185212908.1 hypothetical protein -
  NMK93_RS00830 - 197501..198007 (-) 507 WP_185212909.1 RNA polymerase sigma factor -
  NMK93_RS00835 radA 198077..199465 (+) 1389 WP_185212910.1 DNA repair protein RadA Machinery gene
  NMK93_RS00840 - 199529..200656 (-) 1128 WP_254526650.1 TlpA disulfide reductase family protein -
  NMK93_RS00845 - 200701..201528 (-) 828 WP_185212912.1 YgcG family protein -
  NMK93_RS00850 - 201533..201967 (-) 435 WP_185212913.1 TPM domain-containing protein -
  NMK93_RS00855 - 202053..202631 (-) 579 WP_254526649.1 LemA family protein -
  NMK93_RS00860 - 202782..204329 (+) 1548 WP_254526648.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51034.57 Da        Isoelectric Point: 6.6481

>NTDB_id=709000 NMK93_RS00835 WP_185212910.1 198077..199465(+) (radA) [Sphingobacterium sp. LZ7M1]
MAKTKSAYFCQSCGYESPKWLGQCPSCKQWNTFVEEVVEKASSRVPEWRSTSTGPGIQKRTNKAAVIHEIVYSEEQRILT
PDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPKVKTLYISGEESEQQIKMRAERLAQSSNANCYILTETSM
QNIFKQIDQVEPNVLVIDSIQTLHTAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT
VLQFEGDRNHVYRILRAVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEQVSGISVAAMLEGMRPLMIEVQALVS
NSAYGTPQRSSTGFDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIAALISSQQDIALPSNITFAAE
VGLSGEIRAVNRIEQRIQEAEKLGFEQIFISKYNTKGLDVKRYQILVRPVATLEDVFRILFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=709000 NMK93_RS00835 WP_185212910.1 198077..199465(+) (radA) [Sphingobacterium sp. LZ7M1]
ATGGCAAAAACAAAATCAGCATATTTCTGTCAATCATGTGGATATGAATCTCCAAAGTGGTTGGGGCAATGTCCTTCCTG
TAAGCAATGGAATACCTTTGTGGAAGAGGTTGTGGAAAAGGCATCTAGCCGTGTTCCCGAATGGCGAAGTACCAGTACAG
GTCCTGGAATACAGAAAAGAACGAACAAAGCTGCGGTCATCCATGAGATTGTATACTCCGAAGAACAACGGATCCTGACT
CCTGACAAAGAATTCAACCGTGTTCTAGGGGGAGGAATTGTGCCGGGTTCATTAGTGTTGATCGGCGGGGAGCCGGGAAT
CGGGAAATCTACCTTGATGTTGCAATTGGCCCTTTCCATTCCTAAGGTAAAAACACTTTATATTTCTGGGGAAGAGAGCG
AACAGCAGATCAAGATGCGAGCGGAAAGGCTAGCCCAAAGTTCCAATGCGAATTGTTATATCCTGACCGAAACATCCATG
CAGAACATCTTTAAACAGATCGATCAAGTGGAACCCAATGTGCTCGTCATCGACTCCATACAGACTTTACATACTGCCCA
GATCGAATCGGCTCCCGGTTCGGTATCTCAGGTCAGAGAATGTACAGCTGAACTGCTTCGATTTGCCAAAGAAACCAATA
CTCCGGTATTTATTGTTGGCCATATCACCAAAGACGGATCTATTGCAGGACCAAAGGTATTGGAACACATGGTGGATACC
GTATTGCAGTTTGAAGGAGATAGAAACCATGTATATCGAATCCTGAGAGCAGTAAAGAATAGATTTGGATCTTCTTCGGA
ACTGGGGATTTACGAAATGCAAGGCTCAGGTCTAAGGGAGGTTTCCAATCCATCGGAAATTATGCTTTCGCAAAGGGAGG
AACAGGTCAGTGGAATTTCCGTAGCAGCGATGTTAGAGGGCATGAGGCCGCTGATGATCGAGGTGCAGGCCTTAGTGTCC
AATTCCGCATATGGAACGCCTCAGCGAAGTTCCACCGGCTTTGACACGAAAAGGTTGAACATGCTCTTGGCGGTACTTGA
AAAACGCTTTGGATTTAGGTTAAGTGCTCAGGATGTATTCTTGAATATCGCCGGAGGATTAAGGGTGGAAGACCCAGCAA
TTGATCTAGCCGTGATTGCAGCGCTTATTTCCTCTCAGCAGGATATAGCCCTCCCGTCTAATATAACTTTTGCAGCTGAG
GTTGGCCTGTCTGGAGAAATCAGGGCGGTAAACCGGATCGAACAGCGAATCCAAGAAGCCGAAAAATTAGGATTTGAACA
GATCTTTATCTCAAAATATAATACCAAAGGATTGGATGTGAAAAGATATCAGATCCTGGTCAGGCCAGTGGCCACCCTAG
AAGATGTCTTCAGAATATTGTTTGGTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-226)

Subunit ChlI of Mg-chelatase (ChlI)

(348-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.017

100

0.532
  radA Streptococcus pneumoniae Rx1

50.216

100

0.502
  radA Streptococcus pneumoniae D39

50.216

100

0.502
  radA Streptococcus pneumoniae R6

50.216

100

0.502
  radA Streptococcus pneumoniae TIGR4

50.216

100

0.502
  radA Streptococcus mitis NCTC 12261

50.216

100

0.502
  radA Streptococcus mitis SK321

50.216

100

0.502