Detailed information NTG0709000

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIC72_RS17495
• Genome accession: NZ_CP116191
• Coordinates: 3563762..3564754 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-E1070
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3558762..3569754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIC72_RS17475 (PIC72_17475)	ygbM	3559393..3560169 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
PIC72_RS17480 (PIC72_17480)	ygbN	3560258..3561622 (+)	1365	WP_000104433.1	GntP family transporter	-
PIC72_RS17485 (PIC72_17485)	-	3561765..3562808 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
PIC72_RS17490 (PIC72_17490)	-	3563033..3563584 (+)	552	WP_001179442.1	flavodoxin family protein	-
PIC72_RS17495 (PIC72_17495)	rpoS	3563762..3564754 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIC72_RS17500 (PIC72_17500)	nlpD	3564817..3565911 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PIC72_RS17505 (PIC72_17505)	pcm	3566096..3566722 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
PIC72_RS17510 (PIC72_17510)	surE	3566716..3567477 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIC72_RS17515 (PIC72_17515)	truD	3567458..3568507 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
PIC72_RS17520 (PIC72_17520)	ispF	3568504..3568983 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIC72_RS17525 (PIC72_17525)	ispD	3568983..3569693 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=709000 PIC72_RS17495 WP_000081550.1 3563762..3564754(-) (rpoS) [Escherichia coli strain DETEC-E1070]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=709000 PIC72_RS17495 WP_000081550.1 3563762..3564754(-) (rpoS) [Escherichia coli strain DETEC-E1070]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715