Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NL113_RS20040 Genome accession   NZ_CP101130
Coordinates   4016209..4016805 (-) Length   198 a.a.
NCBI ID   WP_006636366.1    Uniprot ID   M5PFR4
Organism   Bacillus sp. KRF7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4011209..4021805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS20020 - 4011585..4012280 (+) 696 WP_006636370.1 DnaD domain-containing protein -
  NL113_RS20025 nth 4012298..4012960 (+) 663 WP_006636369.1 endonuclease III -
  NL113_RS20030 - 4012957..4013445 (+) 489 WP_006636368.1 YpoC family protein -
  NL113_RS20035 - 4013479..4016151 (-) 2673 WP_029418358.1 PBP1A family penicillin-binding protein -
  NL113_RS20040 recU 4016209..4016805 (-) 597 WP_006636366.1 Holliday junction resolvase RecU Machinery gene
  NL113_RS20045 - 4016871..4017824 (+) 954 WP_224254544.1 DUF2515 domain-containing protein -
  NL113_RS20050 sspM 4017849..4017953 (-) 105 WP_006636364.1 acid-soluble spore protein SspM -
  NL113_RS20055 - 4018151..4018378 (+) 228 WP_006636363.1 DUF5446 family protein -
  NL113_RS20060 - 4018446..4018817 (+) 372 WP_029418359.1 YppE family protein -
  NL113_RS20065 - 4018835..4019035 (-) 201 WP_006636361.1 YppF family protein -
  NL113_RS20070 - 4019217..4019660 (+) 444 WP_006636360.1 YppG family protein -
  NL113_RS20075 - 4019679..4020098 (-) 420 WP_006636359.1 Hsp20/alpha crystallin family protein -
  NL113_RS20080 - 4020272..4020778 (+) 507 WP_006636358.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22891.02 Da        Isoelectric Point: 9.6653

>NTDB_id=708994 NL113_RS20040 WP_006636366.1 4016209..4016805(-) (recU) [Bacillus sp. KRF7]
MIRYPNGKTYQPKPTASSLNKKTSYSNRGMTLEDDLNETNIYYLNHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIKHMKQVVAQGGICFVIISAFGEIYFLEAEKLFGFWERKQQNG
RKSIRKDELEEAAHSISLGYAPRIDYIKVIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=708994 NL113_RS20040 WP_006636366.1 4016209..4016805(-) (recU) [Bacillus sp. KRF7]
GTGATTCGCTATCCGAACGGTAAAACCTATCAGCCGAAACCAACTGCCTCATCCTTAAATAAAAAGACGTCGTACAGCAA
TCGCGGAATGACCCTCGAAGATGATTTGAATGAAACGAATATATATTATCTAAATCATTCCATTGCGGTCATCCATAAAA
AACCGACCCCTGTGCAGATCGTACAAGTCGATTATCCGAAGCGAAGCGCCGCTGTCATAAAAGAAGCGTATTTCAAACAA
TCGTCAACGACTGATTACAATGGGGTTTATAAAGGGCGCTACATCGATTTTGAAGCGAAAGAAACAAAAAGCCGTACATC
CTTCCCCTTGCAGAATTTCCACGACCATCAGATTAAGCATATGAAACAGGTCGTGGCGCAAGGCGGCATTTGCTTTGTTA
TTATATCCGCATTTGGAGAAATTTATTTTCTGGAAGCTGAAAAATTGTTTGGTTTCTGGGAAAGGAAACAGCAAAACGGC
AGAAAATCGATCAGAAAAGATGAGCTTGAAGAAGCCGCTCACTCCATTTCGCTTGGATATGCGCCAAGAATTGATTATAT
TAAAGTTATTGACCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5PFR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

81.592

100

0.828