Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NL113_RS18325 Genome accession   NZ_CP101130
Coordinates   3667675..3668445 (+) Length   256 a.a.
NCBI ID   WP_006637599.1    Uniprot ID   -
Organism   Bacillus sp. KRF7     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3662675..3673445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS18295 - 3662975..3665065 (+) 2091 WP_051056678.1 HD family phosphohydrolase -
  NL113_RS18300 ybeY 3665062..3665538 (+) 477 WP_006637604.1 rRNA maturation RNase YbeY -
  NL113_RS18305 - 3665516..3665896 (+) 381 WP_006637603.1 diacylglycerol kinase family protein -
  NL113_RS18310 - 3665994..3666446 (+) 453 WP_236835380.1 cytidine deaminase -
  NL113_RS18315 era 3666427..3667332 (+) 906 WP_006637601.1 GTPase Era -
  NL113_RS18320 - 3667493..3667636 (+) 144 WP_006637600.1 YqzL family protein -
  NL113_RS18325 recO 3667675..3668445 (+) 771 WP_006637599.1 DNA repair protein RecO Machinery gene
  NL113_RS18330 glyQ 3668782..3669669 (+) 888 WP_006637598.1 glycine--tRNA ligase subunit alpha -
  NL113_RS18335 glyS 3669662..3671701 (+) 2040 WP_006637597.1 glycine--tRNA ligase subunit beta -
  NL113_RS18340 - 3671908..3672546 (+) 639 WP_006637596.1 helix-turn-helix transcriptional regulator -
  NL113_RS18345 - 3672570..3673382 (+) 813 WP_006637595.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29407.16 Da        Isoelectric Point: 9.2713

>NTDB_id=708986 NL113_RS18325 WP_006637599.1 3667675..3668445(+) (recO) [Bacillus sp. KRF7]
MLTKCEGIVLRTNDYGETNKILTILTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMLESMRN
IREDLFLTAHAAYIAELVDKGTDEKKPNPFLFELLLQSMRRLNDGTDPDIITNLIEVKMLGVIGLYPELNECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRVPMSPASARLLRLLFYFDLSRLGNVSVKRETKEELKRVIQLYYDEYSGIFLKSRRFM
EQMDNMKKMLGNENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=708986 NL113_RS18325 WP_006637599.1 3667675..3668445(+) (recO) [Bacillus sp. KRF7]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACGAACGATTATGGTGAAACCAATAAAATTTTGACAATTTTGACAAG
GGAGCATGGGAAAATCGGTGTACTGGCAAGAGGCGCAAAAAAACCGAACAGCCGCTTGTCGGCTATTTCCCAGCCCTTTC
TCTACGCTTCGTTTTTATTTCGGAAATCGTCCGGACTCGGTACGCTTGAGCAGGGCGAAATGCTTGAAAGCATGCGGAAT
ATTCGCGAGGACCTTTTTTTAACGGCGCATGCCGCTTATATCGCCGAATTGGTTGACAAAGGCACGGATGAAAAGAAACC
GAACCCGTTTTTATTCGAACTGCTTCTTCAATCGATGAGAAGGCTGAATGACGGGACTGATCCGGACATCATTACAAACC
TGATCGAAGTCAAAATGCTCGGCGTAATCGGGCTTTATCCGGAATTAAATGAATGCGTCCATTGCAAGAGCAAAGACGGA
ACATTCCATTTTTCAATCCGCGACAACGGCTTTATATGCCATCGCTGCTTTGCGAAGGACCCTTATCGGGTGCCGATGTC
TCCCGCTTCAGCCAGGCTTTTGAGACTGCTTTTTTATTTTGACCTGTCAAGGCTCGGGAATGTATCGGTAAAACGTGAAA
CAAAGGAAGAGCTGAAAAGAGTCATCCAGCTCTATTATGACGAGTACTCGGGAATTTTTCTGAAATCGCGGCGCTTTATG
GAACAGATGGACAATATGAAAAAAATGCTCGGCAATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.953

100

0.77