Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NL113_RS16965 Genome accession   NZ_CP101130
Coordinates   3412582..3413316 (+) Length   244 a.a.
NCBI ID   WP_006637859.1    Uniprot ID   M5P6X3
Organism   Bacillus sp. KRF7     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3407582..3418316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS16950 - 3407773..3407964 (-) 192 WP_006637862.1 hypothetical protein -
  NL113_RS16955 - 3408419..3411061 (+) 2643 WP_006637861.1 valine--tRNA ligase -
  NL113_RS16960 - 3411136..3412434 (+) 1299 WP_006637860.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NL113_RS16965 comC 3412582..3413316 (+) 735 WP_006637859.1 A24 family peptidase Machinery gene
  NL113_RS16970 - 3413514..3414545 (+) 1032 WP_006637858.1 SPOR domain-containing protein -
  NL113_RS16975 - 3414696..3415268 (+) 573 WP_006637857.1 nucleoside triphosphate pyrophosphatase -
  NL113_RS16980 radC 3415323..3415997 (+) 675 WP_006637856.1 DNA repair protein RadC -
  NL113_RS16985 - 3416085..3417095 (+) 1011 WP_006637855.1 rod shape-determining protein -
  NL113_RS16990 mreC 3417126..3418034 (+) 909 WP_006637854.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26217.92 Da        Isoelectric Point: 8.7885

>NTDB_id=708979 NL113_RS16965 WP_006637859.1 3412582..3413316(+) (comC) [Bacillus sp. KRF7]
MYLFIFGLVLGSFFNVAGRRIPENTSLIAPRSACPDCCRPLTFLELIPVLSYILQRGKCRGCKRPVSIVYPAVELAAALL
FAFAYLRIGDPGELVIALFLISLLLIVFVSDVMYMVIPDAVLCFFLPVFAAGRILFPLEPWHSSLTGAIAGCLLPLVAAV
MTKGGIGGGDVKLFAVLGIVLGVRQILLVFVLSAAAGMVMGFAAMLAGKLKRREPLPFAPAILIGTLTGYFYGDPLIGLY
IQMI

Nucleotide


Download         Length: 735 bp        

>NTDB_id=708979 NL113_RS16965 WP_006637859.1 3412582..3413316(+) (comC) [Bacillus sp. KRF7]
ATGTATTTATTTATATTCGGTTTAGTGCTCGGTTCTTTTTTTAATGTGGCCGGCCGCCGCATACCCGAGAACACCTCTTT
GATCGCTCCCCGCTCCGCCTGCCCTGACTGCTGCCGCCCGCTCACTTTTCTTGAACTGATTCCGGTGTTGTCCTATATAT
TGCAGAGGGGAAAATGCAGGGGATGCAAACGGCCTGTTTCCATCGTGTATCCGGCCGTTGAGCTTGCGGCGGCATTGCTG
TTTGCCTTTGCCTATTTAAGGATTGGCGATCCCGGAGAGCTTGTCATCGCGCTTTTCCTCATTTCTTTATTGCTTATCGT
GTTTGTCTCAGATGTGATGTATATGGTCATACCTGATGCCGTCCTTTGTTTTTTTCTGCCTGTTTTTGCCGCCGGGCGCA
TCCTGTTCCCGCTTGAGCCTTGGCATTCAAGCTTAACTGGAGCGATTGCCGGTTGTCTGCTGCCGCTTGTTGCGGCTGTG
ATGACGAAAGGCGGCATCGGCGGGGGAGATGTAAAGCTGTTTGCCGTTCTTGGCATCGTCCTCGGGGTTCGCCAGATTTT
GCTCGTATTCGTTCTGTCTGCGGCTGCCGGAATGGTGATGGGTTTCGCGGCGATGCTGGCTGGGAAGCTAAAACGAAGAG
AGCCATTGCCATTTGCGCCCGCCATTTTGATCGGAACATTGACAGGCTATTTTTATGGCGACCCGCTGATCGGCTTATAC
ATTCAGATGATATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(5-87)

Type IV leader peptidase family (Peptidase_A24)

(98-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P6X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

53.112

98.77

0.525