Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NL113_RS10170 Genome accession   NZ_CP101130
Coordinates   2054605..2055717 (-) Length   370 a.a.
NCBI ID   WP_006639836.1    Uniprot ID   M5P3D1
Organism   Bacillus sp. KRF7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2049605..2060717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS10155 gyrA 2049707..2052181 (-) 2475 WP_006639839.1 DNA gyrase subunit A -
  NL113_RS10160 gyrB 2052372..2054285 (-) 1914 WP_006639838.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NL113_RS10165 remB 2054345..2054587 (-) 243 WP_006639837.1 extracellular matrix regulator RemB -
  NL113_RS10170 recF 2054605..2055717 (-) 1113 WP_006639836.1 DNA replication/repair protein RecF Machinery gene
  NL113_RS10175 yaaA 2055734..2055949 (-) 216 WP_006639835.1 S4 domain-containing protein YaaA -
  NL113_RS10180 dnaN 2056119..2057255 (-) 1137 WP_006639834.1 DNA polymerase III subunit beta -
  NL113_RS10185 dnaA 2057443..2058786 (-) 1344 WP_006639833.1 chromosomal replication initiator protein DnaA -
  NL113_RS10190 - 2059007..2059282 (+) 276 WP_061781685.1 hypothetical protein -
  NL113_RS10195 rpmH 2059430..2059564 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  NL113_RS10200 rnpA 2059650..2060009 (+) 360 WP_006639831.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42437.33 Da        Isoelectric Point: 6.6710

>NTDB_id=708956 NL113_RS10170 WP_006639836.1 2054605..2055717(-) (recF) [Bacillus sp. KRF7]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLNTIQGRVQTFVTTTSVDGIDHQTLNEAEIFRVANGTLLD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=708956 NL113_RS10170 WP_006639836.1 2054605..2055717(-) (recF) [Bacillus sp. KRF7]
TTGTACATCCAAAATCTTACATTATCATCTTACCGTAATTATGAACGCCTTGATCTCCAATTCGAAAACAAAGTGAACGT
GATTATCGGAGAAAACGCCCAAGGCAAGACAAATCTGATGGAAGCGATTTACGTACTTGCGATGGCAAAGTCCCATCGAA
CGTCAAATGACAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTCCC
GTTCCCATCCAGCTTGTCATTTCGAAAAAGGGAAAAAAAGGCAAGGTCAATCATATTGAACAACAGAAACTGAGCCAGTA
TGTCGGGGCTGTAAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAGGTATCACCCGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTCTCACAGCGG
AATCATTTCTTGAAGCAGCTTCAAACAAGAAAACAGACCGATCAAACGATGCTTGATGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGTCTTCAATTTGTTGATCAGCTTGAAAAATGGGCACAGCCTATCCATTCCGGAA
TTTCAAGAGGTCTTGAAGAATTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGTGTATCCCTTTCAGGCCCCCACAG
GGATGATGTTCTTTTCTACGTCAATGGCCGCGATGTGCAGACTTACGGATCACAGGGCCAGCAGCGTACGACGGCATTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCATTTGCTCAACACCATTCAAGGCCGTGTTCAAACCTTCGTAACGACGACGAGCGT
TGATGGAATTGATCATCAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGCAAATGGCACGCTATTGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P3D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

88.618

99.73

0.884