Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NL113_RS09925 Genome accession   NZ_CP101130
Coordinates   2009279..2009572 (+) Length   97 a.a.
NCBI ID   WP_087962552.1    Uniprot ID   -
Organism   Bacillus sp. KRF7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004279..2014572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS09910 - 2004487..2005686 (-) 1200 WP_006640382.1 G5 and 3D domain-containing protein -
  NL113_RS09915 - 2005933..2006700 (-) 768 WP_006640381.1 TatD family hydrolase -
  NL113_RS09920 metG 2006787..2008775 (-) 1989 WP_006640380.1 methionine--tRNA ligase -
  NL113_RS09925 abrB 2009279..2009572 (+) 294 WP_087962552.1 transition state genes transcriptional regulator AbrB Regulator
  NL113_RS09930 rsmI 2009619..2010494 (-) 876 WP_006640378.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NL113_RS09935 - 2010469..2010762 (-) 294 WP_006640377.1 GIY-YIG nuclease family protein -
  NL113_RS09940 - 2010749..2011492 (-) 744 WP_006640376.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NL113_RS09945 yabA 2011573..2011935 (-) 363 WP_006640375.1 DNA replication initiation control protein YabA -
  NL113_RS09950 - 2011950..2012777 (-) 828 WP_006640374.1 stage 0 sporulation family protein -
  NL113_RS09955 holB 2012780..2013769 (-) 990 WP_006640373.1 DNA polymerase III subunit delta' -
  NL113_RS09960 - 2013781..2014221 (-) 441 WP_006640372.1 YaaR family protein -
  NL113_RS09965 - 2014233..2014562 (-) 330 WP_006640371.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10779.57 Da        Isoelectric Point: 5.1848

>NTDB_id=708954 NL113_RS09925 WP_087962552.1 2009279..2009572(+) (abrB) [Bacillus sp. KRF7]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSLKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=708954 NL113_RS09925 WP_087962552.1 2009279..2009572(+) (abrB) [Bacillus sp. KRF7]
ATGAATATGAAATCTACAGGTATCGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATTGAACTTCGCCGTAC
ACTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTGGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAGGTTTCTGATGATAACCTGAAACTTGCTGGCGGTAAACTTGTTCTCAGCCCAGAAGGC
GCTGAACAAATCATCAACGAAATTCAAGCTCAGCTTCAATCTCTAAAAAATTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

98.969

0.938