Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NL113_RS03980 Genome accession   NZ_CP101130
Coordinates   824351..824932 (-) Length   193 a.a.
NCBI ID   WP_006636726.1    Uniprot ID   M5PH60
Organism   Bacillus sp. KRF7     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 819351..829932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS03955 - 819901..820128 (-) 228 WP_123032305.1 JAB domain-containing protein -
  NL113_RS03960 - 820707..822468 (+) 1762 Protein_792 S8 family serine peptidase -
  NL113_RS03965 lepB 822625..823140 (-) 516 WP_006636729.1 signal peptidase I -
  NL113_RS03970 - 823153..823761 (-) 609 WP_006636728.1 TVP38/TMEM64 family protein -
  NL113_RS03975 - 823992..824357 (+) 366 WP_006636727.1 hypothetical protein -
  NL113_RS03980 comK 824351..824932 (-) 582 WP_006636726.1 competence protein ComK Regulator
  NL113_RS03985 - 825204..825437 (+) 234 WP_006636725.1 IDEAL domain-containing protein -
  NL113_RS03990 - 825506..826363 (-) 858 WP_006636724.1 SDR family oxidoreductase -
  NL113_RS03995 - 826498..828027 (+) 1530 WP_006636723.1 FAD-dependent oxidoreductase -
  NL113_RS04000 - 828132..829424 (+) 1293 WP_006636722.1 globin-coupled sensor protein -
  NL113_RS04005 - 829441..829602 (+) 162 WP_006636721.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22585.72 Da        Isoelectric Point: 9.4506

>NTDB_id=708945 NL113_RS03980 WP_006636726.1 824351..824932(-) (comK) [Bacillus sp. KRF7]
MSNTEDMTRDSYEVNSSTMAVLPLDEGKKPASKVIETDRTFRVNMRPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPP
IMVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFRAAKYDNTFVTFVNGESLELPVSISSFENQVYRTAWLRTKFLDRIEG
SAVQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 582 bp        

>NTDB_id=708945 NL113_RS03980 WP_006636726.1 824351..824932(-) (comK) [Bacillus sp. KRF7]
ATGAGCAATACCGAAGATATGACAAGAGATTCTTATGAAGTAAACAGTTCGACAATGGCCGTGCTGCCTCTTGATGAGGG
GAAAAAGCCCGCTTCAAAAGTAATTGAAACCGACAGGACATTTCGGGTCAATATGAGGCCCTTCCAAATTATAGAGAGAA
GCTGCCGCTATTTCGGCTCAAGCTATGCGGGAAGAAAAGCCGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCG
ATCATGGTGGATCATTCAAACAATATTTTTCTTTTTCCCACATTCTCCTCAACAAGGCCTCAATGCGGGTGGCTTTCACA
TGCGCACGTTCATGAATTCCGTGCGGCAAAGTATGACAACACATTCGTCACGTTTGTAAATGGCGAATCTTTGGAGCTGC
CGGTTTCCATCTCATCTTTTGAAAATCAGGTTTACCGCACGGCATGGCTGAGAACCAAGTTTCTCGATCGGATTGAAGGA
AGCGCCGTGCAGAAAAAACAGGAATTTATGCTGTATCCAAAGGAAGACCGGAACCAGCTGATATATGAATTCATCCTCAG
GGAGCTGAAAAAACGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5PH60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

67.876

100

0.679