Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H7680_RS00270 Genome accession   NZ_AP023394
Coordinates   36456..37220 (+) Length   254 a.a.
NCBI ID   WP_012766408.1    Uniprot ID   A0A9X9GAR3
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31456..42220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7680_RS00260 (SDSE159_00190) - 33913..35115 (+) 1203 WP_046177994.1 CHAP domain-containing protein -
  H7680_RS00265 (SDSE159_00200) - 35269..36231 (+) 963 WP_003049033.1 ribose-phosphate diphosphokinase -
  H7680_RS00270 (SDSE159_00210) recO 36456..37220 (+) 765 WP_012766408.1 DNA repair protein RecO Machinery gene
  H7680_RS00275 (SDSE159_00220) plsX 37327..38334 (+) 1008 WP_003056454.1 phosphate acyltransferase PlsX -
  H7680_RS00280 (SDSE159_00230) - 38327..38569 (+) 243 WP_003056449.1 phosphopantetheine-binding protein -
  H7680_RS00285 (SDSE159_00240) purC 38734..39444 (+) 711 WP_012766410.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30015.21 Da        Isoelectric Point: 5.7481

>NTDB_id=70894 H7680_RS00270 WP_012766408.1 36456..37220(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=70894 H7680_RS00270 WP_012766408.1 36456..37220(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGACAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATCAGGACCTTTTTCGACTTTCCTATGCAAGTTATGTAGTGGCTTTGGCAGATGCCGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTCTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTGTGCCCTGAACATTATCATAAAGATGACTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACCATTCAGTTTGATGAATTGAGAACCATTTCTTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAATTGTATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9GAR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.821

96.85

0.618

Multiple sequence alignment