Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NL113_RS01950 Genome accession   NZ_CP101130
Coordinates   437132..437722 (-) Length   196 a.a.
NCBI ID   WP_006638375.1    Uniprot ID   -
Organism   Bacillus sp. KRF7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 432132..442722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS01925 mobB 432353..432889 (-) 537 WP_006638370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  NL113_RS01930 glp 432856..434148 (-) 1293 WP_006638371.1 gephyrin-like molybdotransferase Glp -
  NL113_RS01935 - 434167..435180 (-) 1014 WP_006638372.1 MoeB/ThiF family adenylyltransferase -
  NL113_RS01940 - 435299..435886 (-) 588 WP_006638373.1 molybdenum cofactor guanylyltransferase -
  NL113_RS01945 - 436040..436996 (+) 957 WP_006638374.1 hypothetical protein -
  NL113_RS01950 rok 437132..437722 (-) 591 WP_006638375.1 transcriptional regulator Rok Regulator
  NL113_RS01955 - 438269..438727 (-) 459 WP_006638376.1 TlpA disulfide reductase family protein -
  NL113_RS01960 ahpA 438816..439358 (-) 543 WP_006638377.1 biofilm-specific peroxidase AhpA -
  NL113_RS01965 - 439650..439895 (-) 246 WP_006638378.1 YkuS family protein -
  NL113_RS01970 - 439958..441082 (-) 1125 WP_006638379.1 N-acetyldiaminopimelate deacetylase -
  NL113_RS01975 dapD 441151..441861 (-) 711 WP_006638380.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NL113_RS01980 - 442038..442490 (-) 453 WP_006638381.1 flavodoxin -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22603.50 Da        Isoelectric Point: 9.9960

>NTDB_id=708933 NL113_RS01950 WP_006638375.1 437132..437722(-) (rok) [Bacillus sp. KRF7]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNNDTKKDFRTDRKSESLPVLAELAAQEMKSYQQQ
QQQAQSSQKTQQQTSQQASVLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGDISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=708933 NL113_RS01950 WP_006638375.1 437132..437722(-) (rok) [Bacillus sp. KRF7]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGTTAAATGAAGCTGAGGTTAAGGTCATTAGGGAGTATCA
GATTGAGCGTGACAATATATATGCAAAGCTGCGTGAATTGGATCGCCCATCCAGCTTTAATAATGATACAAAAAAAGATT
TTCGCACAGACCGAAAAAGCGAATCACTTCCTGTTTTAGCTGAATTAGCTGCACAGGAGATGAAAAGCTACCAGCAGCAA
CAGCAGCAGGCGCAGTCATCTCAAAAAACTCAGCAGCAGACTTCTCAGCAAGCCTCTGTTCTGCCGGCCGGAATTCCAGA
CGGTACGACACGGCGCAGAAGAGGCACAGCACGTCCGGGTTCAAAAGCTGCAAAACTTCGTGAAGCGGCCATTAAAACGT
TGAAACGTCACAATGCGGCAATCAAAAGCTCCGAACTTCAAAAAGAGATTGAAAAAGAAAGCGGACTTGAAATTCCTAAT
ATGACAACCTTCATGCAAAGCCTCATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGACATCTCTACTGAGACAGAACAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.675

97.449

0.796