Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NL113_RS01810 Genome accession   NZ_CP101130
Coordinates   411195..411482 (-) Length   95 a.a.
NCBI ID   WP_006638346.1    Uniprot ID   M5P373
Organism   Bacillus sp. KRF7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 406195..416482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS01795 ade 407063..408787 (-) 1725 WP_006638343.1 adenine deaminase -
  NL113_RS01800 - 408924..409586 (-) 663 WP_006638344.1 TrkA family potassium uptake protein -
  NL113_RS01805 - 409659..410990 (-) 1332 WP_006638345.1 ATP-binding protein -
  NL113_RS01810 abrB 411195..411482 (-) 288 WP_006638346.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NL113_RS01815 mreBH 411784..412791 (+) 1008 WP_006638347.1 rod-share determining protein MreBH -
  NL113_RS01820 - 412865..412996 (+) 132 WP_006638348.1 protein YkpC -
  NL113_RS01825 - 413083..414315 (+) 1233 WP_006638349.1 aminopeptidase -
  NL113_RS01830 - 414468..414842 (-) 375 WP_006638350.1 DUF4440 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10696.53 Da        Isoelectric Point: 7.1666

>NTDB_id=708932 NL113_RS01810 WP_006638346.1 411195..411482(-) (abrB) [Bacillus sp. KRF7]
MKSIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDKDKIVLQKYKPHGVCLITGEITSENREYANGKITLSPEGAE
MLLEELKTALHQAKS

Nucleotide


Download         Length: 288 bp        

>NTDB_id=708932 NL113_RS01810 WP_006638346.1 411195..411482(-) (abrB) [Bacillus sp. KRF7]
TTGAAATCAATAGGAGTTGTGAGAAAAGTAGATGAACTCGGCCGCATCGTGATGCCGATTGAGTTAAGAAGGGCGCTGGA
TATTTCAATAAAAGACAGCATTGAGTTTTTTGTAGATAAGGATAAAATTGTTTTACAAAAATATAAACCCCATGGGGTCT
GCCTGATAACCGGAGAGATTACATCCGAAAACCGCGAATATGCAAACGGAAAAATCACGCTGAGCCCAGAGGGCGCTGAA
ATGCTGTTGGAAGAACTGAAAACTGCGCTGCATCAGGCAAAATCCTGA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-87)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P373

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537