Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NK667_RS31990 Genome accession   NZ_CP101125
Coordinates   7216085..7217452 (+) Length   455 a.a.
NCBI ID   WP_054051427.1    Uniprot ID   -
Organism   Pseudomonas nunensis strain In5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7211085..7222452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NK667_RS31965 (NK667_31965) - 7211307..7212020 (-) 714 WP_054051436.1 autoinducer binding domain-containing protein -
  NK667_RS31970 (NK667_31970) - 7212356..7213132 (+) 777 WP_054051434.1 ferredoxin--NADP reductase -
  NK667_RS31975 (NK667_31975) mscL 7213181..7213594 (-) 414 WP_054051433.1 large-conductance mechanosensitive channel protein MscL -
  NK667_RS31980 (NK667_31980) katB 7213882..7215423 (+) 1542 WP_054051431.1 catalase KatB -
  NK667_RS31985 (NK667_31985) - 7215485..7216039 (+) 555 WP_054616682.1 ankyrin repeat domain-containing protein -
  NK667_RS31990 (NK667_31990) radA 7216085..7217452 (+) 1368 WP_054051427.1 DNA repair protein RadA Machinery gene
  NK667_RS31995 (NK667_31995) - 7217611..7217979 (-) 369 WP_054616681.1 PilZ domain-containing protein -
  NK667_RS32000 (NK667_32000) - 7218140..7220206 (+) 2067 WP_054051422.1 carbon starvation CstA family protein -
  NK667_RS32005 (NK667_32005) - 7220222..7220419 (+) 198 WP_054616680.1 YbdD/YjiX family protein -
  NK667_RS32010 (NK667_32010) yjiA 7220583..7221554 (+) 972 WP_054616679.1 GTPase -
  NK667_RS32015 (NK667_32015) - 7221654..7222343 (-) 690 WP_054616678.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48789.25 Da        Isoelectric Point: 7.1316

>NTDB_id=708916 NK667_RS31990 WP_054051427.1 7216085..7217452(+) (radA) [Pseudomonas nunensis strain In5]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIRTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=708916 NK667_RS31990 WP_054051427.1 7216085..7217452(+) (radA) [Pseudomonas nunensis strain In5]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACGCTGACCGAAACCATGGTCGAGAGCGGCGGCGCTGCGGCGCCCAGCGGTCGTACCGGGTGGACCG
GCCAACAAGCGCAGATCAGGACCCTGGCGGAAGTCAGCGTCGAAGAGATTCCACGTTTTTCCACAGCCTCCAGCGAACTC
GACCGCGTGCTCGGCGGTGGCCTGGTGGACGGCTCCGTGGTGTTGATCGGCGGTGACCCCGGCATCGGTAAGTCGACCAT
TCTGTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCGCGGCGTCTCGGTTTGCCCCAGGACAAGCTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGGCAGGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCAGCACC
CGGCGGCGTGTCCCAGGTTCGCGAAAGTGCGGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCACGTGACCAAGGAAGGCGCCTTGGCCGGCCCGCGAGTGTTGGAGCACATGGTTGATACCGTGCTGTATTTCGAA
GGCGAATCCGATGGGCGTTTGCGTCTGCTGCGGGCGGTGAAAAACCGCTTCGGCGCAGTCAACGAACTCGGCGTGTTCGG
CATGACCGACAAAGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACGCGGGCTCAGGAAGAAGTTCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACCCGGCCAATGCTGGTCGAAGTGCAGGCGCTGGTGGATGACAGTCATTTGGCC
AACCCGCGTCGGGTCACCTTGGGGCTGGATCAGAACCGGCTGGCCATGTTGCTGGCGGTGCTGCACCGTCACGGCGGGAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTTGAAACCGCGTCCGACCTGGCGCTGA
TGGCTGCGGTGATGTCCAGCCTGCGCAATCGGCCGCTGCCGCATGATCTGCTGGTGTTTGGCGAAGTCGGGTTGTCGGGT
GAAGTGCGCCCGGTGCCGAGCGGTCAGGAACGCCTGAAAGAAGCCGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAAGAGGCCCCGCCGGGGTTGCAGATTATTGCGGTGACCCGACTGGAACAGGCGTTGGACGCATTAT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466