Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NMK49_RS07260 Genome accession   NZ_CP101124
Coordinates   1520124..1520570 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus RN4220     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1515124..1525570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK49_RS07230 gcvPA 1516050..1517396 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NMK49_RS07235 gcvT 1517416..1518507 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NMK49_RS07240 - 1518666..1519190 (-) 525 WP_001015117.1 shikimate kinase -
  NMK49_RS07245 - 1519180..1519326 (-) 147 WP_254736848.1 hypothetical protein -
  NMK49_RS07250 comGF 1519423..1519920 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NMK49_RS07255 comGE 1519838..1520137 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NMK49_RS07260 comGD 1520124..1520570 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  NMK49_RS07265 comGC 1520548..1520859 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NMK49_RS07270 comGB 1520873..1521943 (-) 1071 Protein_1427 competence type IV pilus assembly protein ComGB -
  NMK49_RS07275 comGA 1521915..1522889 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  NMK49_RS07280 - 1522941..1523564 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NMK49_RS07285 - 1523561..1523890 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NMK49_RS07290 - 1523890..1524876 (-) 987 WP_000161314.1 ROK family glucokinase -
  NMK49_RS07295 - 1524873..1525076 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=708872 NMK49_RS07260 WP_001790850.1 1520124..1520570(-) (comGD) [Staphylococcus aureus subsp. aureus RN4220]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=708872 NMK49_RS07260 WP_001790850.1 1520124..1520570(-) (comGD) [Staphylococcus aureus subsp. aureus RN4220]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993