Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   K6J61_RS01830 Genome accession   NZ_AP018769
Coordinates   375887..376228 (+) Length   113 a.a.
NCBI ID   WP_105893707.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-6 isolate 12H01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 370887..381228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J61_RS01820 (CHBNII6_03410) - 372371..375442 (+) 3072 WP_221252646.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  K6J61_RS01825 (CHBNII6_03420) - 375712..375894 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  K6J61_RS01830 (CHBNII6_03430) HI0659 375887..376228 (+) 342 WP_105893707.1 helix-turn-helix transcriptional regulator Machinery gene
  K6J61_RS01835 (CHBNII6_03440) - 376351..378267 (+) 1917 WP_110459250.1 ABC transporter ATP-binding protein -
  K6J61_RS01840 (CHBNII6_03450) - 378277..378825 (+) 549 WP_048942741.1 type I DNA topoisomerase -
  K6J61_RS01845 (CHBNII6_03460) - 378841..379392 (+) 552 WP_048942742.1 Sua5/YciO/YrdC/YwlC family protein -
  K6J61_RS01850 (CHBNII6_03470) aroE 379396..380202 (+) 807 WP_110459251.1 shikimate dehydrogenase -
  K6J61_RS01855 (CHBNII6_03480) - 380416..380979 (+) 564 WP_110459252.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13106.39 Da        Isoelectric Point: 9.8470

>NTDB_id=70886 K6J61_RS01830 WP_105893707.1 375887..376228(+) (HI0659) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKKCLRYTHCFHIDLLYYK

Nucleotide


Download         Length: 342 bp        

>NTDB_id=70886 K6J61_RS01830 WP_105893707.1 375887..376228(+) (HI0659) [Haemophilus influenzae strain CHBN-II-6 isolate 12H01]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAATTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAACAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAAATGCCTAAGATATACCCATTGTTTTCATAT
TGACTTGTTATATTATAAATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

97.959

86.726

0.85

Multiple sequence alignment