Detailed information NTG0708808

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIB86_RS05655
• Genome accession: NZ_CP116181
• Coordinates: 1173494..1174486 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DETEC-E480
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1168494..1179486

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIB86_RS05625 (PIB86_05625)	ispD	1168555..1169265 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PIB86_RS05630 (PIB86_05630)	ispF	1169265..1169744 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIB86_RS05635 (PIB86_05635)	truD	1169741..1170790 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
PIB86_RS05640 (PIB86_05640)	surE	1170771..1171532 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIB86_RS05645 (PIB86_05645)	pcm	1171526..1172152 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PIB86_RS05650 (PIB86_05650)	nlpD	1172337..1173431 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
PIB86_RS05655 (PIB86_05655)	rpoS	1173494..1174486 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIB86_RS05660 (PIB86_05660)	-	1174657..1175208 (-)	552	WP_001179444.1	flavodoxin family protein	-
PIB86_RS05665 (PIB86_05665)	-	1175433..1176476 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
PIB86_RS05670 (PIB86_05670)	ygbN	1176619..1177983 (-)	1365	WP_000104433.1	GntP family transporter	-
PIB86_RS05675 (PIB86_05675)	ygbM	1178072..1178848 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=708808 PIB86_RS05655 WP_000081550.1 1173494..1174486(+) (rpoS) [Escherichia coli strain DETEC-E480]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=708808 PIB86_RS05655 WP_000081550.1 1173494..1174486(+) (rpoS) [Escherichia coli strain DETEC-E480]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715