Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PIC02_RS17535 Genome accession   NZ_CP116176
Coordinates   3620115..3621107 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain DETEC-E601     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3615115..3626107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC02_RS17510 (PIC02_17505) ygbN 3615770..3617134 (+) 1365 WP_000104439.1 GntP family transporter -
  PIC02_RS17515 (PIC02_17510) - 3617173..3617409 (-) 237 WP_000562975.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  PIC02_RS17520 (PIC02_17515) - 3617420..3618847 (-) 1428 WP_000863223.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  PIC02_RS17525 (PIC02_17520) - 3618847..3619440 (-) 594 WP_000767716.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  PIC02_RS17530 (PIC02_17525) - 3619587..3619994 (+) 408 WP_001208070.1 MarR family winged helix-turn-helix transcriptional regulator -
  PIC02_RS17535 (PIC02_17530) rpoS 3620115..3621107 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  PIC02_RS17540 (PIC02_17535) nlpD 3621170..3622264 (-) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  PIC02_RS17545 (PIC02_17540) pcm 3622449..3623075 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  PIC02_RS17550 (PIC02_17545) surE 3623069..3623830 (-) 762 WP_001447327.1 5'/3'-nucleotidase SurE -
  PIC02_RS17555 (PIC02_17550) truD 3623811..3624860 (-) 1050 WP_000568924.1 tRNA pseudouridine(13) synthase TruD -
  PIC02_RS17560 (PIC02_17555) ispF 3624857..3625336 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PIC02_RS17565 (PIC02_17560) ispD 3625336..3626046 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=708755 PIC02_RS17535 WP_000081550.1 3620115..3621107(-) (rpoS) [Escherichia coli strain DETEC-E601]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=708755 PIC02_RS17535 WP_000081550.1 3620115..3621107(-) (rpoS) [Escherichia coli strain DETEC-E601]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715