Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   NGC85_RS15960 Genome accession   NZ_CP101115
Coordinates   3373000..3374154 (+) Length   384 a.a.
NCBI ID   WP_254732309.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3368000..3379154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS15940 (NGC85_15940) - 3368899..3369660 (+) 762 WP_254732307.1 hypothetical protein -
  NGC85_RS15945 (NGC85_15945) - 3369707..3371818 (-) 2112 WP_254732308.1 TonB-dependent copper receptor -
  NGC85_RS15950 (NGC85_15950) - 3371891..3372328 (-) 438 WP_005060787.1 DUF2946 family protein -
  NGC85_RS15955 (NGC85_15955) def 3372349..3372879 (-) 531 WP_005055584.1 peptide deformylase -
  NGC85_RS15960 (NGC85_15960) tsaP 3373000..3374154 (+) 1155 WP_254732309.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NGC85_RS15965 (NGC85_15965) dprA 3374166..3375296 (+) 1131 WP_254732310.1 DNA-processing protein DprA Machinery gene
  NGC85_RS15970 (NGC85_15970) - 3375368..3375730 (+) 363 WP_254732311.1 hypothetical protein -
  NGC85_RS15975 (NGC85_15975) - 3375837..3376406 (+) 570 WP_254732312.1 L-threonylcarbamoyladenylate synthase -
  NGC85_RS15980 (NGC85_15980) - 3376801..3377721 (-) 921 WP_254732313.1 DMT family transporter -
  NGC85_RS15985 (NGC85_15985) - 3377800..3378468 (-) 669 WP_254732314.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42057.23 Da        Isoelectric Point: 9.5375

>NTDB_id=708755 NGC85_RS15960 WP_254732309.1 3373000..3374154(+) (tsaP) [Acinetobacter sp. Z1]
MKKVLNGIHSFHALGLKKQLIAAAICAGLGMSVNIAHAASPNVNPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCTLNGKPLVGKDEGDGCEGIIRRYSGNSSTTLRPRVRIEALNNSVPVIPLAHIQQWLE
RTTILPADAITNTPYILGTADNRVLAGKGQSVYVRGKGLENGQRYGVFREGEPYFAIDQNGKKQNLGVELTQVASGVTIR
NENDITTLELTDSYNGEVRRGDRIMAEQDAMLPTLFYPIDANQVKDGGKIIRVMGSIGTAAKNGVVTVDRGTADGVETGQ
VFSIYQDGEVVKDPKTKEKVKLPGQYLGSVMIFKSFDRISYAYVLESELPIKIGSDIKPPRLDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=708755 NGC85_RS15960 WP_254732309.1 3373000..3374154(+) (tsaP) [Acinetobacter sp. Z1]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGCCGCAATTTGTGC
GGGTTTAGGCATGAGCGTGAATATTGCCCATGCTGCGAGTCCAAATGTGAACCCACCTTCGGTAAAAGTGGGCGCACCTC
ATGTCTATGTAGTTAAAAAAGGCGATACGCTTTGGGATATTTCAGGCAAGTTTTTAAGTAAACCTTGGCGTTGGCCTGAA
ATTTGGGCAAGCAACAAACACGTTAAAAATCCACATTGGATTTATCCAGGTGACCGCTTATTACTCTGTACATTGAATGG
TAAGCCATTAGTTGGAAAAGACGAAGGTGATGGTTGTGAAGGAATTATTCGTCGCTATTCTGGAAATTCTTCTACAACTT
TACGTCCACGTGTTCGTATCGAAGCATTAAACAATAGTGTCCCTGTCATTCCATTGGCGCATATTCAACAATGGTTAGAG
CGTACGACTATTCTTCCGGCTGATGCGATTACCAATACACCTTATATTTTAGGTACTGCTGATAATCGTGTCTTAGCAGG
TAAAGGTCAAAGCGTTTATGTGCGCGGTAAAGGTCTTGAAAATGGACAACGTTACGGCGTATTCCGCGAAGGCGAACCTT
ATTTTGCGATTGATCAAAATGGTAAAAAGCAGAATCTTGGTGTTGAACTGACTCAAGTTGCCTCTGGTGTGACTATTCGT
AATGAAAATGACATCACTACTTTAGAACTGACCGATAGCTACAATGGTGAAGTCCGTCGTGGCGATCGTATCATGGCTGA
ACAAGATGCTATGTTACCGACACTGTTCTATCCGATTGATGCGAATCAAGTGAAAGATGGCGGTAAAATCATTCGAGTTA
TGGGATCAATTGGTACTGCAGCTAAAAATGGTGTAGTTACCGTAGATCGCGGTACGGCGGATGGCGTTGAAACTGGACAA
GTCTTCAGCATCTATCAAGATGGCGAAGTGGTTAAGGATCCAAAAACGAAAGAAAAAGTGAAATTACCTGGGCAGTATTT
AGGTAGTGTAATGATCTTTAAGAGCTTTGATCGTATCAGCTACGCTTATGTCTTAGAAAGTGAATTACCAATTAAAATTG
GTTCAGACATTAAGCCACCGCGCCTTGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

71.169

100

0.714