Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NGC85_RS15445 Genome accession   NZ_CP101115
Coordinates   3264397..3264723 (-) Length   108 a.a.
NCBI ID   WP_005050884.1    Uniprot ID   N9FGF8
Organism   Acinetobacter sp. Z1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3259397..3269723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS15425 (NGC85_15425) - 3259646..3260260 (-) 615 WP_254732243.1 FHA domain-containing protein -
  NGC85_RS15430 (NGC85_15430) gspD 3260326..3262590 (-) 2265 WP_254732245.1 type II secretion system secretin GspD -
  NGC85_RS15435 (NGC85_15435) - 3262632..3263474 (-) 843 WP_254732247.1 type II secretion system protein N -
  NGC85_RS15440 (NGC85_15440) gspN 3263474..3264217 (-) 744 WP_254805622.1 type II secretion system protein N -
  NGC85_RS15445 (NGC85_15445) hns 3264397..3264723 (-) 327 WP_005050884.1 H-NS family nucleoid-associated regulatory protein Regulator
  NGC85_RS15450 (NGC85_15450) - 3265096..3265530 (-) 435 WP_005060977.1 thioesterase family protein -
  NGC85_RS15455 (NGC85_15455) - 3265538..3266731 (-) 1194 WP_034710976.1 hypothetical protein -
  NGC85_RS15460 (NGC85_15460) - 3266738..3267568 (-) 831 WP_005050878.1 hypothetical protein -
  NGC85_RS15465 (NGC85_15465) - 3267565..3268341 (-) 777 WP_254732249.1 uroporphyrinogen-III synthase -
  NGC85_RS15470 (NGC85_15470) hemC 3268341..3269258 (-) 918 WP_005060970.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12315.03 Da        Isoelectric Point: 5.0355

>NTDB_id=708750 NGC85_RS15445 WP_005050884.1 3264397..3264723(-) (hns) [Acinetobacter sp. Z1]
MKPDISDLSVEDLKRLQVEAEALIASKKDQAIEDAYNQIIAIAEAVGFSVEELLELGEQKRKKTTRKAVEPRYRNKSNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=708750 NGC85_RS15445 WP_005050884.1 3264397..3264723(-) (hns) [Acinetobacter sp. Z1]
ATGAAACCAGATATTAGTGATTTATCTGTAGAAGATCTAAAACGTTTACAGGTAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATTATTGCGATTGCTGAAGCTGTAGGTTTTAGTGTTGAAGAGCTTT
TAGAGCTTGGTGAACAAAAACGCAAAAAAACAACGCGTAAAGCTGTAGAGCCGCGTTACCGCAATAAAAGTAATACAGAA
GAGACTTGGACTGGTCGTGGTAAACAACCGCGCTGGTTAGTCGCTGAATTAGAAAAAGGTGCCAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9FGF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889