Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   NGC85_RS14940 Genome accession   NZ_CP101115
Coordinates   3149476..3151701 (+) Length   741 a.a.
NCBI ID   WP_254732188.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3144476..3156701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS14915 (NGC85_14915) - 3144588..3145427 (+) 840 WP_005051114.1 HlyC/CorC family transporter -
  NGC85_RS14920 (NGC85_14920) lnt 3145424..3146983 (+) 1560 WP_254732184.1 apolipoprotein N-acyltransferase -
  NGC85_RS14925 (NGC85_14925) - 3147046..3147390 (-) 345 WP_254732186.1 hypothetical protein -
  NGC85_RS14930 (NGC85_14930) gspG 3147653..3148090 (-) 438 WP_005051105.1 type II secretion system major pseudopilin GspG -
  NGC85_RS14935 (NGC85_14935) gspF 3148114..3149319 (-) 1206 WP_005061123.1 type II secretion system inner membrane protein GspF -
  NGC85_RS14940 (NGC85_14940) priA 3149476..3151701 (+) 2226 WP_254732188.1 primosomal protein N' Machinery gene
  NGC85_RS14945 (NGC85_14945) - 3151818..3153638 (+) 1821 WP_254732190.1 cation:proton antiporter -
  NGC85_RS14950 (NGC85_14950) - 3153756..3154631 (+) 876 WP_254732192.1 Hsp33 family molecular chaperone HslO -
  NGC85_RS14955 (NGC85_14955) - 3154797..3155741 (+) 945 WP_254732194.1 DnaJ C-terminal domain-containing protein -
  NGC85_RS14960 (NGC85_14960) - 3155753..3156079 (+) 327 WP_004659218.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84322.35 Da        Isoelectric Point: 8.6533

>NTDB_id=708747 NGC85_RS14940 WP_254732188.1 3149476..3151701(+) (priA) [Acinetobacter sp. Z1]
MPTENSNAFPYRIRVALPVYVYDTFDYTVSAEQYQQAQVGARVAVSFGRQNLVGIITEKVDTNEIFTGQFKLKAITELLD
NEAILDQQVLTLLTWSAQYYQFPIGEVIQSALPSFLRQGRALDILFHLWKIIPHDNPDVLLKRSQKQYDAYQVLKLHPHG
TTENILNLSSIETATLKALEKKGLVECCLEPHDFTPIPVQLAQVPLTPNEDQKRSIQQILKAQNHYQAFLLDGLTGSGKT
EVYLQVMYEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALMHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PQLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVILGSATPSIDSYHLVESGKLQLLELNQRAGVAVLPKMHV
IDLKISKKKHGMSQTLIDQIKLTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPECQKQSLKTIGVGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDLRAPERTAQLIVQVAGRAGRGEHKGTVYLQSLRPDHPMLTTLIKHDYRAVAKQMLAERKIALL
PPYRYAALVRIESKDREYSQQFLADIAQQLRLMAGDLVDIWGPIPAPMERKAGRFRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=708747 NGC85_RS14940 WP_254732188.1 3149476..3151701(+) (priA) [Acinetobacter sp. Z1]
ATGCCGACCGAAAATTCTAACGCTTTTCCTTACCGTATTCGAGTTGCCCTACCCGTTTATGTGTATGACACGTTTGACTA
CACGGTCAGTGCTGAACAATATCAGCAAGCTCAAGTCGGCGCACGTGTTGCCGTCTCATTTGGACGACAAAACCTCGTTG
GTATCATTACTGAAAAAGTTGATACCAACGAAATATTTACAGGGCAATTCAAACTTAAAGCGATTACAGAATTACTCGAT
AATGAAGCAATATTAGATCAACAAGTTTTAACTTTGTTGACATGGTCAGCTCAGTATTATCAATTTCCCATCGGTGAAGT
GATTCAAAGTGCTTTACCAAGTTTTTTAAGACAAGGCCGTGCTTTAGATATTTTGTTTCATCTTTGGAAAATTATTCCGC
ATGATAATCCAGATGTATTATTGAAACGCTCTCAAAAACAATATGATGCATATCAGGTTTTAAAATTACATCCTCATGGC
ACAACAGAAAATATTTTAAATCTGAGTAGCATCGAAACGGCGACGCTTAAAGCATTAGAAAAAAAAGGCTTAGTCGAATG
TTGTCTCGAACCACATGATTTCACCCCAATACCTGTACAGCTTGCTCAAGTCCCCTTAACACCTAATGAAGATCAGAAAA
GATCGATCCAACAGATCCTCAAAGCTCAAAATCATTATCAAGCATTTTTACTCGATGGCTTAACTGGAAGTGGTAAAACC
GAAGTTTATCTGCAAGTCATGTATGAAGTATTAAAACAAGGTAAACAAGTCTTGGTTCTGGTTCCTGAGATTGGTTTAAC
CCCACAAACGGTTGCTCGCTTTAAATCACGCTTTCATTGTGATGTGGCTTTAATGCATTCTGGTTTAAATGATTCAAAGC
GTTTGCAGGCTTGGCAACACGCGCAAACAGGTAAAGCTTCAATTATTATTGGCACACGTTCTGCAATCTATACACCATTG
CCTCAACTAGGCTTGATCATTTTAGATGAAGAACACGACTTATCCTATAAACAACAAGAAGGTTTTCGCTATCATGCCCG
TGATGTCGCTTTATATCGAGGTCATTTACAAGGCTGTCCTGTCATTCTCGGTTCAGCAACGCCAAGTATTGATAGTTATC
ATCTAGTTGAATCAGGCAAATTACAGTTGCTTGAACTGAATCAACGTGCAGGCGTTGCAGTACTGCCCAAAATGCATGTC
ATTGATTTAAAAATTAGTAAAAAAAAGCATGGTATGAGTCAAACATTGATTGATCAAATCAAACTGACTTTAGAACGTAA
AGAACAAGTACTCATCTTTTTAAATCGACGCGGTTATGCACCGATTCTGATGTGTGAAAGTTGTGGCTGGCAAGCCAATT
GCCCTCATTGTGATGCCCATTTCACACTACACTCACAACCTTATCATTATTTGCATTGTCATCATTGTGGAACGATCAAT
CGTTTGCCAGATCATTGTCCTGAGTGTCAAAAGCAAAGTTTAAAAACGATTGGGGTTGGAACAGCCAAGCTTGAAGAACA
TTTACAAGAACTGTTTCCTCATAATGAAGTCATTCGTGTTGATCGTGACAGTACCAGTCGTGTAGGCAGCTGGCAGAAAA
TTTATGATCGCATTCAACAAAATAAACCTAGCATTTTATTGGGTACACAGATGTTGGCAAAAGGTCATCATTTCCCTTAT
GTCACCTTGGTTGCTATTTTAGATATTGATTCAGGTCTACTCAGTGTGGATTTGCGTGCACCTGAACGCACTGCACAATT
AATTGTTCAAGTCGCAGGTCGTGCAGGACGCGGAGAACATAAAGGTACTGTGTATTTACAAAGTCTCCGTCCTGATCATC
CGATGCTTACCACATTGATTAAACATGACTACCGCGCAGTCGCTAAGCAGATGTTAGCCGAACGTAAAATCGCACTACTG
CCGCCCTATCGTTATGCGGCTTTGGTTCGAATCGAATCGAAAGATCGGGAATATAGCCAACAGTTCTTAGCTGATATTGC
ACAACAGTTGAGACTCATGGCAGGCGACTTGGTTGATATTTGGGGACCGATTCCTGCACCTATGGAACGAAAAGCAGGTC
GTTTCAGAGCACATATGGTGATTTTGTCTGCTGATCGCGCCAAACTGCACTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGACAACATCAACTTAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.461

99.73

0.812