Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   NGC85_RS14380 Genome accession   NZ_CP101115
Coordinates   3045908..3046795 (-) Length   295 a.a.
NCBI ID   WP_034710806.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3040908..3051795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS14360 (NGC85_14360) - 3041475..3042557 (+) 1083 WP_254732054.1 PhoH family protein -
  NGC85_RS14365 (NGC85_14365) ybeY 3042608..3043093 (+) 486 WP_254732058.1 rRNA maturation RNase YbeY -
  NGC85_RS14370 (NGC85_14370) - 3043105..3043404 (+) 300 WP_254732060.1 antibiotic biosynthesis monooxygenase -
  NGC85_RS14375 (NGC85_14375) - 3043466..3045628 (-) 2163 WP_254732062.1 TonB-dependent siderophore receptor -
  NGC85_RS14380 (NGC85_14380) tonB2 3045908..3046795 (-) 888 WP_034710806.1 energy transducer TonB Machinery gene
  NGC85_RS14385 (NGC85_14385) - 3047066..3047749 (+) 684 WP_254732064.1 hypothetical protein -
  NGC85_RS14390 (NGC85_14390) - 3047953..3048666 (+) 714 WP_005061321.1 DUF3108 domain-containing protein -
  NGC85_RS14395 (NGC85_14395) - 3048755..3049330 (+) 576 WP_005061319.1 xanthine phosphoribosyltransferase -
  NGC85_RS14400 (NGC85_14400) thyA 3049488..3050330 (+) 843 WP_254732066.1 thymidylate synthase -
  NGC85_RS14405 (NGC85_14405) - 3050345..3050854 (+) 510 WP_254732068.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33698.48 Da        Isoelectric Point: 9.6315

>NTDB_id=708746 NGC85_RS14380 WP_034710806.1 3045908..3046795(-) (tonB2) [Acinetobacter sp. Z1]
MLKKINFRSHLLQYWWQDPIFVGAVVFAIFMHLVILTIQFAMPSPSDTSTKEIAVTVRTSSDKVKDADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGEAELESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKSLDELQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPNEAKQQRLSGEVRLMVILNAQGGIRAIRL
IESSGHSILDEAAKASVRRGAPFGTFDATMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=708746 NGC85_RS14380 WP_034710806.1 3045908..3046795(-) (tonB2) [Acinetobacter sp. Z1]
ATGCTAAAGAAAATAAATTTTCGTTCTCACCTGTTACAGTATTGGTGGCAAGATCCAATTTTTGTCGGAGCAGTTGTCTT
CGCAATATTCATGCATCTTGTAATACTTACCATCCAATTTGCAATGCCATCACCTTCAGATACCTCAACCAAAGAAATCG
CAGTAACGGTTCGGACTAGTTCTGATAAAGTTAAAGATGCAGATTTCTTGGCGCAGGCTGATCAAAAAGGTTCTGGTGAG
TTCCGTGAAGCACATCGCATGTCTAGTGATATGCCTTCACCTATGCAAGCAGATGCTACGACCGGCGAAGCTGAACTTGA
AAGTTTAGAAAAGATTCAACAGAAAAGAGAATTAAAGTTTGAAGAAAAGGTCTTGATGACCGTTTTAAGTTGGCAAAAAC
AAGCTGAACAAAGTGAGCGTAAAAAGTCGTTAGATGAATTACAAAGTCAATTTCAAGCGAAAGCGGCAATGGTTGCGAGT
TTAGAGGCGCAGTATTTACAACGACAACAAAATTTTAGTCGTAAACAGCGCATTAAAACAGTAGACGGCATTCAAGCTAA
ACAAGATGCATCTGCTGCATATTTGGATAAATTCCGTCAAAAAGTTGAGTTGTATGGAAATCGTTATTATCCGAATGAAG
CCAAGCAACAACGCTTGAGCGGCGAGGTTCGTTTAATGGTGATTCTAAATGCTCAAGGTGGGATTCGTGCAATCCGTTTA
ATTGAAAGTTCTGGGCATAGCATTTTGGATGAGGCTGCGAAAGCATCGGTTCGTCGCGGTGCGCCATTTGGAACATTTGA
TGCCACTATGAAAAAAGATATTTCAGAATTACGCATTATTCGGACATGGCGCTTTGATCCAGTAGATGCAGAATTTGAAG
TGCATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769