Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NKU06_RS09755 Genome accession   NZ_CP101112
Coordinates   2056038..2056979 (+) Length   313 a.a.
NCBI ID   WP_254730520.1    Uniprot ID   -
Organism   Moraxella sp. FZLJ2109     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2051038..2061979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKU06_RS09735 (NKU06_09735) - 2051947..2052696 (-) 750 WP_254730506.1 XRE family transcriptional regulator -
  NKU06_RS09740 (NKU06_09740) - 2052809..2052958 (+) 150 WP_254730508.1 hypothetical protein -
  NKU06_RS09745 (NKU06_09745) - 2052918..2053451 (+) 534 WP_254730518.1 DNA-primase RepB domain-containing protein -
  NKU06_RS09750 (NKU06_09750) - 2053553..2055673 (+) 2121 WP_254730519.1 PhoX family phosphatase -
  NKU06_RS09755 (NKU06_09755) pilA 2056038..2056979 (+) 942 WP_254730520.1 signal recognition particle-docking protein FtsY Machinery gene
  NKU06_RS09760 (NKU06_09760) - 2057038..2057586 (+) 549 WP_254730521.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  NKU06_RS09765 (NKU06_09765) - 2057726..2058754 (+) 1029 WP_253223506.1 quinone-dependent dihydroorotate dehydrogenase -
  NKU06_RS09770 (NKU06_09770) - 2058767..2059276 (+) 510 WP_254730523.1 CvpA family protein -
  NKU06_RS09775 (NKU06_09775) purF 2059370..2060899 (+) 1530 WP_253223508.1 amidophosphoribosyltransferase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33807.62 Da        Isoelectric Point: 4.9964

>NTDB_id=708705 NKU06_RS09755 WP_254730520.1 2056038..2056979(+) (pilA) [Moraxella sp. FZLJ2109]
MSENEQGGWFARMKAGLAKSSKNLSEGLVNVLVGGKEIDDELLEEVEDQLLVADIGVNATNRIIKNLTEQTARGDLIYSH
SLYKALKSELHDILAPKVHPLDIDTEKKPYVILMVGVNGVGKTTTIGKLAKRLQKQGKSVMLAAGDTFRAAATEQLQIWG
ERNGIPVIAQGHGSDSASVIFDAMQSARAKGIDVLIADTAGRLQNKSHLMQELEKVVRVMKKADETAPHETMIVLDAGTG
QNAINQVQVFSEAVNITGISITKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFEPKEFVDALLEKDE

Nucleotide


Download         Length: 942 bp        

>NTDB_id=708705 NKU06_RS09755 WP_254730520.1 2056038..2056979(+) (pilA) [Moraxella sp. FZLJ2109]
ATGAGCGAAAACGAACAAGGCGGCTGGTTTGCTCGCATGAAAGCAGGGCTTGCTAAGTCGAGCAAAAATCTGTCCGAAGG
CTTGGTGAATGTACTGGTCGGTGGTAAAGAGATTGATGATGAGCTGTTAGAAGAAGTTGAAGATCAGTTGCTTGTCGCGG
ACATCGGCGTCAATGCCACCAATCGCATTATTAAGAATCTGACCGAGCAGACCGCGCGCGGTGATTTGATTTATTCGCAT
TCGCTGTACAAGGCGCTAAAGTCTGAATTACACGATATTCTTGCGCCCAAGGTGCATCCGCTTGATATTGACACCGAGAA
GAAGCCTTATGTGATCTTGATGGTCGGTGTCAATGGCGTGGGCAAAACCACCACCATCGGTAAGCTTGCCAAGCGCCTAC
AAAAACAAGGCAAATCAGTCATGCTGGCAGCGGGCGACACTTTCCGTGCTGCTGCGACCGAGCAGCTGCAGATTTGGGGT
GAGCGAAACGGCATTCCTGTCATCGCCCAAGGCCATGGTTCGGACAGTGCATCGGTGATTTTTGATGCCATGCAATCGGC
ACGCGCCAAGGGCATTGATGTCTTGATCGCTGATACCGCAGGGCGCTTGCAGAATAAATCGCATCTGATGCAAGAGCTTG
AAAAAGTCGTGCGCGTGATGAAAAAAGCCGATGAGACTGCGCCACATGAGACGATGATCGTGCTGGACGCTGGCACGGGT
CAAAACGCCATCAATCAAGTGCAGGTATTCTCTGAAGCGGTGAATATCACAGGCATCAGCATCACCAAGCTTGATGGCAC
AGCCAAAGGCGGCGTGGTGTTTAACATCGCTCAAAATACCGATATCCCAATCCGCTTTATTGGCGTGGGCGAAGGCATTG
ATGATTTGCAGCCATTTGAACCCAAAGAATTTGTCGATGCACTGCTAGAAAAAGATGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(110-309)

SRP54-type protein, helical bundle domain (SRP54_N)

(25-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.427

98.722

0.518