Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   PIC86_RS20535 Genome accession   NZ_CP116169
Coordinates   4236272..4237519 (+) Length   415 a.a.
NCBI ID   WP_196613086.1    Uniprot ID   -
Organism   Escherichia coli strain DETEC-P1056     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4231272..4242519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC86_RS20520 (PIC86_20515) - 4231787..4233463 (+) 1677 WP_196613089.1 polysaccharide biosynthesis/export family protein -
  PIC86_RS20525 (PIC86_20520) kdsB 4233473..4234213 (+) 741 WP_196613088.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PIC86_RS20530 (PIC86_20525) - 4234210..4236237 (+) 2028 WP_196613087.1 capsular polysaccharide biosynthesis protein -
  PIC86_RS20535 (PIC86_20530) kpsS 4236272..4237519 (+) 1248 WP_196613086.1 capsule biosynthesis protein Regulator
  PIC86_RS20540 (PIC86_20535) - 4237628..4239220 (-) 1593 WP_196613085.1 WcbI family polysaccharide biosynthesis putative acetyltransferase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49364.66 Da        Isoelectric Point: 10.0148

>NTDB_id=708686 PIC86_RS20535 WP_196613086.1 4236272..4237519(+) (kpsS) [Escherichia coli strain DETEC-P1056]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLTDMPASHVENLTPSTM
KRIGHAMWYYLIGWHYRNEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRSLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGRVNIGEKNRY
ESDYSYYSKKPHDNG

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=708686 PIC86_RS20535 WP_196613086.1 4236272..4237519(+) (kpsS) [Escherichia coli strain DETEC-P1056]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTACAGGGGCCAATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTAGTATTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACATTATCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGTATCCG
CTTCCTAGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTAACAGATATGCCTGCGTCGCATGTTGAGAACTTAACACCTTCAACAATG
AAACGTATTGGCCATGCGATGTGGTATTACCTGATAGGCTGGCATTACCGTAATGAGTTTCCTCGCTATCGCCATCACAA
ATCGTTTTCTCCCTGGTATGAGGCTCGTTGCTGGGTTCGAGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGATCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGTTGATTCATAATAAACCACTTAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATGGGAGAGTAAACATTGGAGAAAAAAATAGGTAT
GAAAGTGATTACTCCTATTATTCAAAGAAACCACATGACAATGGCTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

93.735

0.373