Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMC95_RS14975 Genome accession   NZ_CP101103
Coordinates   3051199..3051813 (-) Length   204 a.a.
NCBI ID   WP_061381843.1    Uniprot ID   -
Organism   Citrobacter werkmanii strain OT56     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046199..3056813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMC95_RS14960 (NMC95_14920) helD 3046423..3048477 (-) 2055 WP_370606308.1 DNA helicase IV -
  NMC95_RS14965 (NMC95_14925) - 3048603..3049049 (+) 447 WP_038639436.1 YccF domain-containing protein -
  NMC95_RS14970 (NMC95_14930) yccS 3049068..3051230 (+) 2163 WP_042314206.1 YccS family putative transporter -
  NMC95_RS14975 (NMC95_14935) sxy/tfoX 3051199..3051813 (-) 615 WP_061381843.1 TfoX/Sxy family DNA transformation protein Regulator
  NMC95_RS14980 (NMC95_14940) sulA 3052030..3052539 (+) 510 WP_042314183.1 SOS-induced cell division inhibitor SulA -
  NMC95_RS14985 (NMC95_14945) ompA 3052897..3053955 (+) 1059 WP_042314186.1 porin OmpA -
  NMC95_RS14990 (NMC95_14950) matP 3054054..3054506 (-) 453 WP_042314187.1 macrodomain Ter protein MatP -
  NMC95_RS14995 (NMC95_14955) - 3054692..3056452 (+) 1761 WP_317679286.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23102.68 Da        Isoelectric Point: 9.5531

>NTDB_id=708672 NMC95_RS14975 WP_061381843.1 3051199..3051813(-) (sxy/tfoX) [Citrobacter werkmanii strain OT56]
MKELSYAKIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSVQYCVKNPPVWLTFIKRGRPVVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKAKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNN
PALTVKILYALEGAVGGVHEAALPAVRRQELVEWVSSLTPKPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708672 NMC95_RS14975 WP_061381843.1 3051199..3051813(-) (sxy/tfoX) [Citrobacter werkmanii strain OT56]
ATGAAAGAACTTTCTTATGCAAAGATCTATAAATCACAAGAATATCTGGCATCTCTGGGAACCATTCATTATCGCTCACT
GTTTGGCAGCTACAGTTTGACGGTTGGGGATACGGTCTTTGCGATGGTCGCCAGCGGTGAGTTATATCTTCGGGCCTGCG
AGCAGAGCGTACAGTACTGTGTAAAAAATCCGCCTGTCTGGCTGACATTTATAAAGCGCGGGCGTCCGGTGGTACTCAAC
TACTATCAGGTGAATGATGCGCTGTGGCAAAACCAGCAGCAGCTGGTGTCGCTATCGCGGTACTCATTGGATGCCGCTGT
TAAGGCAAAACAGAGTCGCTTTGCTCAACATCGTCTGCGGGAACTACCAAATATGACGTTTCATCTGGAGACCCTGCTAA
ATGAAGCAGGAATTAAAGATGAGGGAACATTGCGAACGTTGGGCGCCCAAATGTGCTGGCTGAAACTGCGGCAAAATAAT
CCAGCCCTGACGGTAAAAATACTTTATGCCCTTGAAGGCGCGGTCGGTGGCGTGCATGAAGCAGCGCTCCCGGCGGTCCG
TCGCCAGGAGCTGGTGGAGTGGGTCAGTTCCCTGACGCCGAAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.118

100

0.691