Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NMC97_RS16430 Genome accession   NZ_CP101095
Coordinates   3301945..3302559 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain OT69     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3296945..3307559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMC97_RS16415 (NMC97_16395) helD 3297169..3299223 (-) 2055 WP_126956792.1 DNA helicase IV -
  NMC97_RS16420 (NMC97_16400) - 3299349..3299795 (+) 447 WP_149335617.1 YccF domain-containing protein -
  NMC97_RS16425 (NMC97_16405) yccS 3299814..3301967 (+) 2154 WP_126956790.1 YccS family putative transporter -
  NMC97_RS16430 (NMC97_16410) sxy/tfoX 3301945..3302559 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  NMC97_RS16435 (NMC97_16415) sulA 3302777..3303286 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  NMC97_RS16440 (NMC97_16420) ompA 3303644..3304690 (+) 1047 WP_126318575.1 porin OmpA -
  NMC97_RS16445 (NMC97_16425) matP 3304779..3305231 (-) 453 WP_003831992.1 macrodomain Ter protein MatP -
  NMC97_RS16450 (NMC97_16430) - 3305417..3307177 (+) 1761 WP_126956788.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=708624 NMC97_RS16430 WP_003831996.1 3301945..3302559(-) (sxy/tfoX) [Citrobacter portucalensis strain OT69]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=708624 NMC97_RS16430 WP_003831996.1 3301945..3302559(-) (sxy/tfoX) [Citrobacter portucalensis strain OT69]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCGTTGGATGCTGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACCCTGCTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676