Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PID12_RS17010 Genome accession   NZ_CP116166
Coordinates   3463842..3464447 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DETEC-P169     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3458842..3469447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PID12_RS16990 (PID12_16985) aes 3458879..3459838 (+) 960 WP_000801846.1 acetyl esterase -
  PID12_RS16995 (PID12_16990) hemH 3459835..3460797 (-) 963 WP_001250088.1 ferrochelatase -
  PID12_RS17000 (PID12_16995) adk 3461033..3461677 (-) 645 WP_001220233.1 adenylate kinase -
  PID12_RS17005 (PID12_17000) htpG 3461858..3463732 (-) 1875 WP_000678213.1 molecular chaperone HtpG -
  PID12_RS17010 (PID12_17005) recR 3463842..3464447 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PID12_RS17015 (PID12_17010) ybaB 3464447..3464776 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PID12_RS17020 (PID12_17015) dnaX 3464829..3466760 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  PID12_RS17025 (PID12_17020) apt 3466889..3467440 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PID12_RS17030 (PID12_17025) ybaN 3467593..3467970 (-) 378 WP_001188905.1 DUF454 family protein -
  PID12_RS17035 (PID12_17030) priC 3468040..3468567 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  PID12_RS17040 (PID12_17035) rsmS 3468581..3468742 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=708599 PID12_RS17010 WP_001195025.1 3463842..3464447(-) (recR) [Escherichia coli strain DETEC-P169]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=708599 PID12_RS17010 WP_001195025.1 3463842..3464447(-) (recR) [Escherichia coli strain DETEC-P169]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443